RNA id: XM_039793639.1


Basic Information

Item Value
RNA id XM_039793639.1
length 3243
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC120554627
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20595095 ~ 20635922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGGAATTaaacaaaaagtgaaaaaacaacCTTACTATATTTTTGTCTTCTCGTTTACCTTTTCTAGATCCTCCCATCTCCCTCTTTGTCTTGttattttctcccttttctctcccctctgagTGTTGAAAAGTTTCCCTCTTCGGCTTGTTATTTTGTCCCTTGATACCCTCTCCCCCATCGGAAAGTTGCCCCTGTGTGGCTGTTTCTGCCCCCAGGATTGAAGCATGAACACTGGGACGTTCACAGGCTCGGGCCCCCTGTCCTGGGCCGTGTACCTGATGAGGAAGGGCCGGACGAGCGGCGCACTCTTTGACCCCGCCCCCGGCCGGCGGTACACACCCCCCTCCACCACGCTGGCCTCGGGGGGGAAGATGGCCGAGGCGCTGCCTCTGGGCGCCGCGCAGGACAACGCCGGAGGCGGGTCTTCACTGGCGGGGAAACTACGCCTGGCTGAGCGCGGCATGGTGGAGGTGATCTCGGACCATCCAGGTGAGCTGGTGAAGACGGACAGTCCTAACTTCCTGTGCTCCGTGCTGCCGACACACTGGAGGTGCAACAAGACGCTGCCCATCGCCTTCAAGGTGGTTGCCCTGGGTGACACACCTGAAGGCACCTTGGTAACGGTGATGGCGGGAAACGATGAGAACTACTCAGCCGAGCTTCGCAACGCCACAGCCGCCATCAAGAACCAAGTGGCCAGATTCAACGATCTGCGCTTTGTCGGCCGCAGCGGACGAGGGAAGAGTTTCACTCTTACCATCACCGTATTCACCAACCCTCCTCAGGTGGCCACATACCAGAGAGCCATTAAAATCACAGTGGACGGTCCGAGAGAGCCACGACGTCACCGTCAGAAGATGGACGAAGTCAAACCTGGCTCCCTGGCTTTCTCCGAGCGGCTAACAGAGCTGGAACAGCTGAGACGGGGCTCGATGAGGGTGACGCCCCCtcaccaccatcaccatcaacacTCGGCCAACACTCGCCAATCTGCAGCACTGAACTCCGCCCCCTTCTCCAGCCCGACACACGCTCAGATAACTGCCGACTCCAGACAGATGCAGTCATCTCCGTCCTGGTCCTACGACCAATCGTATCCCTACCTTGGCCAGATAACCACGCCCACCGTCCACACAGCCAATCCCCTCTCGCCTGGTCGATCCTCGCTCAGTGACCTGTCTTCACGACTCTCAGGTCCTGAGCTCACAGCATTTGGCGACCCAAGGATGACGTTAGAACGACCTTTCCCCTCCCTGCCTGACTCGCGTTTCTCCGGCCACGCCCCTCTTTTCACCTCACAGCTTTTACACTTCCACCCTCCCTCCACATGCCACCCATACCACACTTACCTCCATTCCATAACACTTCACACCCCAGAAGATAATTCCAGTCCAGCCCTCCACCACCTGTACTACTCCACCGCCGCCGGCTCCTACCAGTTCTCTATGATGGCTGGGGGGGCCAGCGGCGACTCACGCTCCCCGCCAAGGATCTTGCCACCCTGCACCAACGCCTCCACAGGCTCCGCTCTCCTGCACCCCTCGCTGCCCAATCAGAACGAAGTAGTCGGTGTGGAGGTGGAGTCCAGCCACAGCAGCTCACCAACCAACATGGCCGCAGCTGAAGCTGTCTGGAGACCGTACTGAACCCCTAACCCTGCAGATCGTACTGAAcccctaaccctgcagactgtaCTGAACCACTAACCCTGCAGACCGTACGGAACCCCTAACCTTGGAGACCATTCTGAACCCCTAACCCTGGAGACTGTACTGAAGACCTTACCCTGGAGACCGTACTGAACCCCTAATCCTGGAGACTGTACTGAAGACCTAATCCTGCAGATCATACTGAACCCCTAACCCTGGACTGAACATCTAACCAACTGAAACCCAACAGAAACCCGGGAGAACCTCACTGGCCCCAACCTCAACGATCCAACATGGCGCTCTATGTATATTGTTTCTTATTAATAAAATGGTTGAGTGATTTCCCCAAAAAGCTGATGGAAGATATATCAGGTACAGTCAGTGTTGGTTTATGTGTGCACATGGGACTTATATATAagaaaaatattgaatatttaCAGATTTATCCTTCAAGAGAGAGTCTGGGTGTGTTTCATACACACCGGTTGTTGCATGTGAGACAAAAGATTGTCCTATGTTTGACCTGAGAGAAACCCTCCGGCAGTCCAGTTGGTATGGTCTCACCCTATCCCGGCTCATAGTCAGCTTTTCTCAGCTTCATTTcactgtaaagaccgctaaacttaactgtcatgtgaccggccGGCAGTCGCTtaattttgtaggatatcatacaaattgttgtATCATGGGAATGCGGTTACAGTGAGAAGGGAGGAAATGTCGGGACACATGCTACTATCAGTTAGCAGTGATGTTAATTGTCACCTATCGATGCAGTTCCCTAGGTGTTCCTTGGGTAAACTGCATCTCAGGAAGTCTGCTgactcattatttttttatatatgtgcaCTGATATTTGGGAAAACTTTACGTCATCACTTGACCAGGACAAGTGAGTCATCCTGATAAAAAGCCGTGACTGGACCTAACAGAGGAGCTTCTACTGAATGGAAGCACTCCGTACGGACAAACGGAGGTTTTACAGACCGATAAATGGAGGTTTTACGAACCGGTAAACGGAGGTTGTACACTGACAAAGCGCATGCAGCAGCACTGGACTGATCTAGAGTCAGCTTCCTTTGTAAAATAACATGAATATTGTTGATGTTAATGTAGTGTACAGATGATTATGACGGCCTGTTTGTGTTTATCTGTCCATCTTTCCATGGTTTATTTTAACTCTTGGGTGATATTTTTTACTAAACTCAGCCCAAAACAAAGATACACGATGACTTCATTCACTTTGGGCccaaatcaaacaaaaatggTGACATAATAAACCAAAAATTCAGTCGATTTATTCCTTATTTATTACAGACAGTCTGAACTAGACTGTCCACAGCGACAAACCATTACAGCATGGAGTTTTATAAAATGCTTTAATTTATTCCTACAATACCATTTGTTGGTAGCATTTTAAGTATGTGTGTTgatctgtactgtatataaccaTAAATTATACCTGCATATGGTCATGttttcatcctctctctctcgttgtctctctcacacaataATTTAGTTTTCATGTTGTTGATGTTCCACATCTGGTTTTGATGAATATAAACCTTCTTACAAAGAAAATA

Function

GO: NA

KEGG:

id description
K09280 RUNXA_B; runt-related transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320605 lncRNA upstream 36496 20558255 ~ 20558599 (+) True G236313
TU320604 lncRNA upstream 37000 20557892 ~ 20558095 (+) True G236312
TU320596 lncRNA upstream 83107 20511674 ~ 20511988 (+) True G236304
TU320582 lncRNA upstream 84019 20508154 ~ 20511076 (+) False LOC120554724
TU320541 lncRNA upstream 188769 20383386 ~ 20406326 (+) False cd99
XR_005638522.1 lncRNA downstream 25455 20661377 ~ 20662785 (+) True LOC120554584
TU320632 lncRNA downstream 41266 20677188 ~ 20677431 (+) True G236334
XR_005638268.1 lncRNA downstream 60002 20695924 ~ 20696532 (+) True LOC120554017
TU320649 lncRNA downstream 116694 20752616 ~ 20753017 (+) True G236346
TU320666 lncRNA downstream 133554 20769476 ~ 20841778 (+) False fmnl2b
XM_039793731.1 mRNA upstream 85181 20487667 ~ 20509914 (+) True LOC120554724
XM_039793628.1 mRNA upstream 114769 20459974 ~ 20480326 (+) True LOC120554612
XM_039793629.1 mRNA upstream 114769 20459986 ~ 20480326 (+) False LOC120554612
XM_039792555.1 mRNA upstream 175977 20409012 ~ 20419118 (+) True gyg2
XM_039792920.1 mRNA upstream 188769 20383321 ~ 20406326 (+) True cd99
XM_039792556.1 mRNA downstream 57038 20692960 ~ 20694611 (+) True LOC120554008
XM_039792557.1 mRNA downstream 70470 20706392 ~ 20707535 (+) True LOC120554009
XM_039793231.1 mRNA downstream 166345 20802267 ~ 20832663 (+) True fmnl2b
XM_039793203.1 mRNA downstream 240509 20876431 ~ 20886020 (+) True cavin2b
XM_039793634.1 mRNA downstream 252047 20887969 ~ 20889752 (+) True ebpl
XR_005638570.1 other upstream 85150 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 197776 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 361300 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 597428 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2413283 18176825 ~ 18181812 (+) True G235778
TU320664 other downstream 179814 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 276733 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 666404 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 772005 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 772005 21407927 ~ 21422915 (+) True G236461

Expression Profile