RNA id: TU320640


Basic Information

Item Value
RNA id TU320640
length 1167
RNA type TUCP
GC content 0.45
exon number 2
gene id G236340
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20726403 ~ 20728427 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acattcccaggccatggttaccatgacaacactttcacagacacacacccagatactacaggcagtaatatgaacagtagtctatacagatactacaggcagtaatatgaacagtagtctatacagatactacaggcagtaacatgaacagtagtctctttggccttccacttctgtccgtctgtcttctctgtctgtccatcctctttctgtcctctttcttctttcctctttctgtcttctttcctctttctgtcctctgttctctttctgtcctctcgctctcttttctctttcctctttctgtcctctgttctctttcctcttccttaCCTCTTcgttcctctctgtcctctttcttctttcttctttctgtcctctttctgtcctttcttctttcctctttctgttctcttgctctctgttctctttcctctttctgtcctctttcttccctctttattcttccctctgtcctctgtcttctttctttcctctttcctctttctgtcctctcgctccctgtcctctttcctctttctgtcctctttcttcttccctctttctgtcctctcgctccctgtcctctttcctctttctgtcctctttcttcttccctctttctgtcctctcgctccctgtcctctttcctctttcttcttccctctttctgtcctctttcttctttctgtcctctcgctccctgtcctctttcctctttctgtcctctttcttccctctttattcttccctctgtcctctttcttctttctttcctctttcctctttctgtcctctcgctccttgtcttctttcctctttctgtcctctttcttcttccctctttctgtcctctcgctccctgtcctctttcctctttctttcctctttcttcttccctctttctgtcctctttcttctttctgtcctctcgctccctgttctctttcctctttctgtcctctttcttccctctttattcttccctctgtcctctttcttctttctttcctctttctgtcctctttcttcttccctctttctgtcctctcgctccctgtcctctttctgtcctctttcttcttccctctttctgtcctctcgctccctgtcctctttcctctttctgtcctctttctttcctctttcctctttctttcctctttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320633 lncRNA downstream 49102 20677054 ~ 20677301 (-) True G236335
TU320621 lncRNA downstream 90524 20633878 ~ 20635879 (-) True G236326
TU320603 lncRNA downstream 170420 20555715 ~ 20555983 (-) True G236311
TU320602 lncRNA downstream 185704 20540455 ~ 20540699 (-) True G236310
TU320601 lncRNA downstream 188289 20537901 ~ 20538114 (-) True G236309
TU320650 lncRNA upstream 24182 20752609 ~ 20753023 (-) False G236347
TU320652 lncRNA upstream 24182 20752609 ~ 20753023 (-) False G236347
TU320653 lncRNA upstream 24182 20752609 ~ 20753023 (-) True G236347
TU320654 lncRNA upstream 24182 20752609 ~ 20753023 (-) False G236347
XR_005638571.1 lncRNA upstream 24923 20753350 ~ 20754536 (-) True LOC120554725
XM_039793653.1 mRNA downstream 270340 20442981 ~ 20456063 (-) True LOC120554635
XM_039792919.1 mRNA downstream 345911 20375593 ~ 20380492 (-) False dhrsx
XM_039792917.1 mRNA downstream 345911 20375593 ~ 20380492 (-) False dhrsx
XM_039792918.1 mRNA downstream 345911 20375593 ~ 20380492 (-) False dhrsx
XM_039792916.1 mRNA downstream 345912 20375593 ~ 20380491 (-) True dhrsx
XM_039793228.1 mRNA upstream 65919 20794346 ~ 20802270 (-) True LOC120554361
XM_039793230.1 mRNA upstream 65919 20794346 ~ 20802205 (-) False LOC120554361
XM_039793229.1 mRNA upstream 65919 20794346 ~ 20802202 (-) False LOC120554361
XM_039792558.1 mRNA upstream 116874 20845301 ~ 20850464 (-) True rgn
XM_039793201.1 mRNA upstream 125138 20853565 ~ 20867800 (-) True vps16
TU320553 other downstream 357970 20367341 ~ 20368433 (-) True G236277
TU320378 other downstream 993866 19731319 ~ 19732537 (-) True G236111
TU319844 other downstream 2981203 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 3622886 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 3817985 16908345 ~ 16908418 (-) True trnat-agu_62
TU320656 other upstream 32281 20760708 ~ 20760992 (-) True G236349
TU321082 other upstream 115065 20843492 ~ 20853383 (-) False rgn
TU321084 other upstream 115065 20843492 ~ 20853383 (-) False rgn
TU321086 other upstream 115624 20844051 ~ 20853383 (-) False rgn
TU321079 other upstream 116934 20845361 ~ 20853383 (-) False rgn

Expression Profile