RNA id: XM_039793231.1


Basic Information

Item Value
RNA id XM_039793231.1
length 4838
RNA type mRNA
GC content 0.54
exon number 28
gene id fmnl2b
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20769476 ~ 20841778 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTgaggggagacagacagagagagagacagacaggttataaacagagagacagagacacagagaaaggcCTTCCCCGCCGCGGTGGAccgcctgcctgtctgtctgcctgtctgtgtgtgtgtgtgtctgtctgtgtgtctgagcAGTGATGGCGGTCCACATGTTCCTGCCTGACtgactgtgtgttgttgtagGTGGGTGTGTTCgctgtgtgagagagtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtccgtgtgtgtgtcagtaagaGATGGGTAACGCGGAGAGCATGGAGAGCCAGCTGGCGGTGATCAGATCCAGAGCTGCTCCGGTCCGCCTGCCGATGCCAGACCCGGCCGAGCTGGAGGAGAGGTTCTCCATCGCTCtgAACTCGATGAACTTGCCTCCCGACAAGGTGCGTCTGCTGCGTTCCTATGACAACGAGAAGAAGTGGGAGCTGATCTGCGATCAGgAGAGGTTTCAGGTGAAGAATCCTCCGCACACCTACATCCAGAAACTGAGAGGCTTCCTCGACCCGGCCGTCACTCGCAAGAAATTCAGAAGAAGAGTTCAGGAGTCGACTCAGATGCTCAGAGAACTCGAGATTTCTCTTCGTACAAACCACATCGGgtgGGTCAGAGAGTTTCTAAACGAGGAGAATCGAGGTCTGGACGTTCTGGTCGAGTATTTGTCCTTTGCTCAGTACGCCGTCACGTTTGACGGCGAGCAGTCGGAGGCCAGCGGTGACGCCTCGTCCATCGACTCTCCCTGGAGTCGGTCCATCGAGGATCTCCATGGCGACTGCAGCCTCCCGTCGCCGTCGTCCTCGGTACCGCGCACCGCTCGTCACTCCATCAGCTCGGCGATCGTGACTCGCTCCAACACGCTGCCCAGTCGTCGGACTCTCAAGAACTCCCGACTCGTGTGTAAGAAAGACGACGTCCATGTTTGCGTCATGTGTCTGAGAGCCATCATGAACTACCAGTATGGATTCAACATGGTGATGTCACATCCGCACGCTGTCAACGAGATCGCCCTCAGCCTCAACAACAGAAACCCCAGGACGAAGGCTCTGGTGTTGGAGTTGTTGGCGGCCGTGTGTTTGGTCAGAGGAGGACACGAGATCATCCTGTCAGCCTTCGACCACTTCAAAACGGTGTGTTCAGAGTCGATGCGTTTTGAGAAGTTGATGGAACATTTTAAGAATGAAGACGACAACATCGACTTCCTGGTGGCCTGCATGCAGTTCATCAACATCGTGGTCCACTCGGTGGAGGACATGAACTTCAGAGTCCACCTGCAGTACGACTTCACCAAACTCAACCTGGACGAACACCTGGAGaGGCTGAAGCACACGGAGAGCGACAGGCTGCAGGTCCAGATCCAGGCGTACCTGGACAACGTGTTTGACGTTGGGACGCTGCTGGAGGACGCAGAGACCAAAACTGCTGCTCTGGAACGAGTCGAAGAACTGGAGGAGAACCTGGCAACgatgTCGGAGCGTCTGCTGGACGTGGAGAATGAAGCGATGCTGAAGATCGTTGAgctggagaaacagctgatgcAAACCAACAAGGAGCTGGACCACATCCGGGATGTGTATGCGAGTACTAACTCCACGGTCCACACCCTGAGGAGGATGGTTCGGGAGAAGGACCAGACCATCCGGCGCCAGACCCGTCTGGAGCGCCAGGCCCAGGAAGCCCAGCAGGCCGGAGGACCTGGAGCCCCCCAACCACCCAGAGGGGAGGGggatgggggggtgggggagtcTGCCTcaccctccccccctccctgccCCAACCTGTCCCCCAGTCCAGAGACCGTAGCCTATCACGGCATGGGACCAGGGATGGGCGGGGCTCCAGAGACCGTAGCCTATCACAGCATGGGACCAGGGATGGGCGGGGCTCCAGGGATGccgccgccccccccccctccccctcctccgccACCGATGCCAGGCACAGAGTCATTCCCTGGCCCTCCGCCCAtggctcctccccctcctcccccccctcctccccctccctgtcGGACCAACGCCCACTCCTCCACCCTCCCcatgcccccccctccccctcctgtaGCCCCACCCCTCCCAGGCTCGGGGGGGTCGCCCACCGTCATCTTTAACTCCGGACTCGCAGGGCCCTCTCAATTATTCTcGGTGAAGATAAAGAAGCCAATCCAGACGAAGTTCCGGATGCCGGTGTTGAACTGGGTCGCTCTGAAGCCGAGTCAGATCAACGGGACCGTCTTTAACGACATCGACGACGAGGCTATCCTGCAGgATCTGAACGTGGAGGAGTTTGAGGAGATGTTTAAGACAAAGGCTCAGGGTCCTGCGGTGGACCTGACTCTGTCCCGACAGAAACTCCCTCAGAAAGCTCCATCCAAAGTGTCTCTGCTGGACGCCAACCGGTCCAAAAACCTGGCCATCACTCTGAGGAAGGCCGGccaggggtcagaggtcatcTGCCGCGCCATCAACACCTTTGACTTGCGGTCGGTCCGGGTTGACTTCGTGGAGTGTCTGATGCGTTTCCTGCCGACGGAGGCCGAGGTGAAGCTTCTACGGCAATacgagagagacagaaaacctGTGGAGGCTCTGAGCGACGAGGACCGCTTCATGATGCAGTTCAGCCGCATCGAACGCCTCAACCAGCGCATGACCATCATGACCTTCATGGGAAACTTCTCCGACAACGTTCAGATGCTAACCCCgCAACTCCACGCCATcatagctgcttcagtttctaTCAAATCTTCTCAGAAGCTGAAGAAGATCCTGGAGATCATCTTGGCTCTGGGGAACTACATGAACAGCAGTAAGAGAGGAGCAGTGTACGGATTCAAACTGCAGAGTTTAGAcctgCTGCTGGACACTAAGTCGACAGACCGAACGCAGACGCTGCTCCATTACATCTCCAACGTGGTGAGAGAGAAATATCCGGCCAAGGCTCTGTTCTACAACGAGCTGCACTATGTCGACAAGGCGGCCGCAGTGAGTCTGGAGAATGTGCTGTGTGATGTGAAGGAGCTGCAGCGCGGCATGGAGTTAACCTGGAGGGAGTTCAGCGTTCTTCACAACGCCACGCTCAAAGACTTCATCAGCAGACACGAGTCACGACTCAGCAAACTGCAGGAAGACGCACGCATCGCTCAGGACGCATTTGAAGACGTGGTGAAATTTTTTGGCGAGAGCTCCAAGACGATGCCCCCGTCCGTCTTCTTCCCGATCTTCGTCCGTTTCATTAAAGCCTACAGGCTGGCGGAGGAGGAGAATGAGCAGAGGAGGCGTCAGGAACAAATGTTGTTGGAGAAACTGGAACAGGAGGACGAGGACCAGGAGGAGACCAAGTCTCCCTCCCATAGGGGGGGGAAGCGACAGCAGCAGGAGTTGCTCTCAGAGCTCAGACGACGACAGGGAAAAGACAGCCGCCATGTTTACGAAGGAAAAGACGGCGCCATTGAGGACATCATCACAGCTCTGAAGACCGTCCCCTTCACCGCCCGATCGGCAAAACGCAGCTCTCGCTTCTTCTGTGACCCCGCCCACTCCGAGGAGCATTACTAAGAGAGACATCGGAGACAGACATTACGTCAGAAAGACATTTCTTCTGAGAAAGACAGAGATCAGACAGAGACatcggagagagagagggcctGAAACCAACACCGACTACGGGCCAATGGCGTGGGAAACTGACCTCTAGCTGCCCCAATGTGTCGGCACATAACCGCCAACAAGCACGCaacaaaaagagaagaagaggattCAGAGAAACCTAAAAAGAAGACCTTTTAATACCAAGAGGACAGTTGGAGACATCACCGAGGTTTCCTGCACTTACATGTACTGTTAACAAGTTCAAATGCTCATGCATTTCCTGTATTTCACCTTGATGAGGAGTCAACATTGGCTGGTGGCCCAAATATTCCCCTCAGCCCAgatcaggagagagagacacttcatcagagagagagacagtttcTCTGTCAGCATGTTTGACGAGTTTTCTTTAGCTGGCCACGCCCACTTCCAATCGTCGGGATCAATTAGCACTTTGAACATTTCTGATGGATATGATTAATGTTTTCTTGTTATTTTATTGCTCAGTTTGTGCACAGAGAAGGTTCCCAGACACCACTGACCTCTGGGAAATGTTCCAACCAAACCAACCTCCAGTCAAGAATTAGGCAATTTTAGGGTCTTTCACATCTGCTTTGGTTAGTTTGGGTTGAAGCTGGAGACAGACGCCCGCAAAGCAGAGCCTAAAGGGCCGTCCATACTGAGAACCATAATAGATAACCATGACTGTAACCGTGACTGTAACCGCGACTGTAAACGCGACTGTAACCATGACTATAACGGTGTCTACACTGCTAAACGATAACGTTCTGTAAACAGCGACGAACCAGCCGGTAATTAAACATAACGTTATACAGCAGGAGCTGCAGCATAGAATTAGAGAAATGTCTGTAGTAATATCTTACATATATGTGGATTTAAACACACTTTATGAACATTAAAGGCTGTCGTGGGTTTGTGGGCCCCAGAAAACAGCGGAGCCCAGCACTGCAGAGagatggattctgattggctgtcagtgtcTCTCTCCACCAGGTAATATTGTAAACTcagatggattctgattggctgtcagtgttTCTATCGATCACATCTGAAAGTGATCCAATGATATCGTTCTCTGCTGTCGATGATATAGTTGTGGAATGGTCTCCACCGTCCAGCAGAGTCAGAACGTTGTTTTaaactatatatacatatacacacacacacacacacacacacacacacacacac

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K23957 FMNL; formic-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320686 lncRNA upstream 6867 20793466 ~ 20795400 (+) True G236361
TU320649 lncRNA upstream 49250 20752616 ~ 20753017 (+) True G236346
XR_005638268.1 lncRNA upstream 105735 20695924 ~ 20696532 (+) True LOC120554017
TU320632 lncRNA upstream 124836 20677188 ~ 20677431 (+) True G236334
XR_005638522.1 lncRNA upstream 139482 20661377 ~ 20662785 (+) True LOC120554584
TU320681 lncRNA downstream 12985 20845648 ~ 20887369 (+) False cavin2b
TU320685 lncRNA downstream 32851 20865514 ~ 20866411 (+) True G236360
TU320708 lncRNA downstream 34015 20866678 ~ 20867801 (+) True G236377
TU320710 lncRNA downstream 38003 20870666 ~ 20873613 (+) False G236378
TU320711 lncRNA downstream 38183 20870846 ~ 20873130 (+) True G236379
XM_039792557.1 mRNA upstream 94732 20706392 ~ 20707535 (+) True LOC120554009
XM_039792556.1 mRNA upstream 107656 20692960 ~ 20694611 (+) True LOC120554008
XM_039793639.1 mRNA upstream 166345 20595095 ~ 20635922 (+) True LOC120554627
XM_039793731.1 mRNA upstream 292353 20487667 ~ 20509914 (+) True LOC120554724
XM_039793628.1 mRNA upstream 321941 20459974 ~ 20480326 (+) True LOC120554612
XM_039793203.1 mRNA downstream 43768 20876431 ~ 20886020 (+) True cavin2b
XM_039793634.1 mRNA downstream 55306 20887969 ~ 20889752 (+) True ebpl
XM_039793685.1 mRNA downstream 119489 20952152 ~ 20956272 (+) True eef1b2
XM_039793673.1 mRNA downstream 124286 20956949 ~ 20964585 (+) True zdbf2
XM_039793674.1 mRNA downstream 124286 20956949 ~ 20964585 (+) False zdbf2
XR_005638570.1 other upstream 292322 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 404948 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 568472 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 804600 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2620455 18176825 ~ 18181812 (+) True G235778
TU320732 other downstream 79992 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 469663 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 575264 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 575264 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 578149 21410812 ~ 21422915 (+) False G236461

Expression Profile