RNA id: TU320673


Basic Information

Item Value
RNA id TU320673
length 1872
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G236355
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20786949 ~ 20837810 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgggggaccactaaggcctatataaaagagacttcagatacattattagaggaccactaaggtctacataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattagaggaccactaaggtctatataagagagacttcagatacagtattaggggaccactaaggcctacataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagcatcatgtcataggacctttaacacGTTACAGGtaacatctctagaacaacagACCCTAACCTTTAAACATGGTACAGGTGTAAGAAGACTTTCAGGATAAACTGACCCGAATCAGGAGTTATTGATGTTTAACATGAAGATGTAACGTCAGACTGCTGGTGAGGCTCTGAACAGGACACACCTGGACACACCTGTAAAACATGGAGACACCTGTAAAACATGGACACACCTGGACACACCTGTAAAACATGGACACACCTGTAAAACATGGACACACCTGGACACACCTGTAAAACATGGACACACCTGTAAAACATGGACACACCTGGACACACCTGTAAAACATGGACACACCTGCAAAACATGGACACACCTGGACACACCTGTAAAACATGGACACACCTGGACACACCTGTAAAACATGGACACAAATggacacacctgcacacacatggacacacctgTAAAACATGGACACACCTGGAAACACCTGTAAAACATGGACACACCTGTAAAACATGGAAACACCTGTAAAACATAGACACACCTGGACACACCTGTAAAACATAGACACACCTGTAAAACATGGACACACCTGTAAAACATGGAAACACCTGTAAAACATAGACACACCTGGACACACCTGTAAAAGATGAACACACCTGGACACACCTGCAAAACATGGACACAAATGGACACAACTGCAAAACATGGACACACCTGGACACACCtggacacacatggacacacctgTAAAACATGGACACACATCGACACACATGGACACGCATGGACACACCTATAAAACAtggacacacatggacacacctgTAAAACATGGACACACCTGGACACACCTGTAAAGCATGGACACACCTGGACACACctataaaacatacacacacctgtaaAACATGGACACACCTGGACACACCTGTAAAGCATGGACACACCTGGACACACctataaaacatacacacacctgtaaAACATGGACACACCTGTAAAACATGGACACAGCTGTAAAACAtggacacacatggacacacctacaaaacatggacacacctggacacacctgtaaaacatggacacacctggacacacctgtaaaacatggacacacatggacacacatgtaaaacatggacacacatggacacacctgTAAAACATGGACACACCTGTAAAACATACACACCTGtaaaacatagacacacatggacacacctgtaaaacatggacacacatggacacacctgtaaaacatagacacacatggacacacacatggacacacctgtaaaacatggacacacatggacacacacatggacacacctgTAAAACATAGACATACCTGTAAAACAtggacacacatggacacacctgtaaaacatagacacacacatggacacacctgtaaaacatagacacacacatggacacacctgtaaaacatggacacacctgtaaaacatggacacacatggacacacctgtaaaacatagacacacacatggacacacctgTAAAACATAGACACACCTATAAAACATGGACACACCTATAAAACATGGACACACCTGTAAAACATGGACACCCCGATAA

Function

GO:

id name namespace
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0021954 central nervous system neuron development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320649 lncRNA upstream 33932 20752616 ~ 20753017 (+) True G236346
XR_005638268.1 lncRNA upstream 90417 20695924 ~ 20696532 (+) True LOC120554017
TU320632 lncRNA upstream 109518 20677188 ~ 20677431 (+) True G236334
XR_005638522.1 lncRNA upstream 124164 20661377 ~ 20662785 (+) True LOC120554584
TU320617 lncRNA upstream 151104 20633878 ~ 20635845 (+) False LOC120554627
TU320681 lncRNA downstream 7838 20845648 ~ 20887369 (+) False cavin2b
TU320685 lncRNA downstream 27704 20865514 ~ 20866411 (+) True G236360
TU320708 lncRNA downstream 28868 20866678 ~ 20867801 (+) True G236377
TU320710 lncRNA downstream 32856 20870666 ~ 20873613 (+) False G236378
TU320711 lncRNA downstream 33036 20870846 ~ 20873130 (+) True G236379
XM_039792557.1 mRNA upstream 79414 20706392 ~ 20707535 (+) True LOC120554009
XM_039792556.1 mRNA upstream 92338 20692960 ~ 20694611 (+) True LOC120554008
XM_039793639.1 mRNA upstream 151027 20595095 ~ 20635922 (+) True LOC120554627
XM_039793731.1 mRNA upstream 277035 20487667 ~ 20509914 (+) True LOC120554724
XM_039793629.1 mRNA upstream 306623 20459986 ~ 20480326 (+) False LOC120554612
XM_039793203.1 mRNA downstream 38621 20876431 ~ 20886020 (+) True cavin2b
XM_039793634.1 mRNA downstream 50159 20887969 ~ 20889752 (+) True ebpl
XM_039793685.1 mRNA downstream 114342 20952152 ~ 20956272 (+) True eef1b2
XM_039793673.1 mRNA downstream 119139 20956949 ~ 20964585 (+) True zdbf2
XM_039793674.1 mRNA downstream 119139 20956949 ~ 20964585 (+) False zdbf2
XR_005638570.1 other upstream 277004 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 389630 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 553154 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 789282 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2605137 18176825 ~ 18181812 (+) True G235778
TU320732 other downstream 74845 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 464516 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 570117 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 570117 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 573002 21410812 ~ 21422915 (+) False G236461

Expression Profile