RNA id: TU320686


Basic Information

Item Value
RNA id TU320686
length 1692
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G236361
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20793466 ~ 20795400 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTATAGAACTATAGAACTATATAAGTATAGAAATATAGAACTATAGAAGTATAGAACTATATAAGATAATTCTAGAAGCATAGAAGAGAACTATAGAACTATAGAAGTACAGAAGAGTACTATAGAAGTATAGAACTATAGAAGTATAGAAGATAACTATATAAGTATAGAACTAAAGAAGAGAACTGTAGAAGTATAGAACTATAGAAGAGAACTATAGAACTACAGAAGAGAACTATAGAAGTATTCTTCTGTTGTGTCATGTTTACTTCCTCTACACCAGGGGGGGATGTAACTATGTACATTTACTATAGTACAGTGAACGTAGGTACTAAAGTACACAttcaaggtacttgtactttgagTATTTACAAGCTATGCAACATATCAAGACTTTGCCACAAACACTGGCTGCTTAGAGACCCCCGGGAGtcttgatgttgaatgtttgtgatgaacTGAAGGATTCAGTGTAttcctttatgtgttgagaaACTTATcctaaataacataaataaagtctttaaaaatcCTCTTGGATAAGCTGTCAAATGCAtcatcacaaagctgaaaacagataCATGGTTCTACAGGACAGCCACGCTACAAACCTACATTACTGtagaatgagagggggaaacaccagagcagggggaatgagagggggaaacgccagagcagggggaatgagagggggaaacaccagagcagggggaatgagagggggaaacatcagagcagggggaatgagagggggaacaccagagcagggggaatgagagggagaaacatcagagcagggggaatgagagggggaaacaccagagcagggggaatgagagggagaaacatcagagcagggggaatgagagggagaaacaccagagcagggggaatgagaggggggaacaccagagcagggggaatgagagggggaaacgtagcagtGTAAATACTGTGgtctcctcttttcttctctcttaaCGATCCAGATCATCGATGCTGTTTCCTCCAttgttctctttctcctcctccttctctctctcctgcttctctttcatttcatctttctccctctccccctctttctcctccctctctttcatcctctctttctcttgcttctctctctctcgtccctCTTTTTTCAGATCCTGAAACACCTCTGTGAAGAAGTGCGGCTCAGCATTGATCCGCAGCATGTCGGCACTCAGCCGGTCGATCAGCTGCAGCGCtctctcccagaatgcatcgcGGCTGGACTCCCAGGATGCATTGTGGCTGGACTCCCAGGATGCATTGTGGCTGGACTCCCAGGATGCATTGTGGCTGGACTCCCAGGATGCATTGTGGCTGGCCTCCAGCAGGAAGGGTTTGAGCGGGTAGGAGATCTCGCTGCCCAGGTACGAGTAGCTCAGGTAGAGACAGGTGAGGAAGACGGAGTGCAGCTCCTGCTCCGAAGACGTGTCCTCGTCTACTGCTGCCCGGCACAGCAGGTACACAAAGACCAGACTGGCAGGACTGGTGAAGACCTGGTCCTACAAGGAGAACAGACAGGTACTGGGGGGACACCATAGTTTCATTTAAAGAAATATAGACTAATGTGCAGCACACATCTTGCATAATAGATATCAACTAGAAAATGCCACAGGAAATGTTGACAGTGTGCCTACTACATCCGAATAACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320649 lncRNA upstream 40449 20752616 ~ 20753017 (+) True G236346
XR_005638268.1 lncRNA upstream 96934 20695924 ~ 20696532 (+) True LOC120554017
TU320632 lncRNA upstream 116035 20677188 ~ 20677431 (+) True G236334
XR_005638522.1 lncRNA upstream 130681 20661377 ~ 20662785 (+) True LOC120554584
TU320617 lncRNA upstream 157621 20633878 ~ 20635845 (+) False LOC120554627
TU320662 lncRNA downstream 3998 20799398 ~ 20841778 (+) False fmnl2b
TU320691 lncRNA downstream 5448 20800848 ~ 20871610 (+) False G236364
TU320681 lncRNA downstream 50248 20845648 ~ 20887369 (+) False cavin2b
TU320685 lncRNA downstream 70114 20865514 ~ 20866411 (+) True G236360
TU320708 lncRNA downstream 71278 20866678 ~ 20867801 (+) True G236377
XM_039792557.1 mRNA upstream 85931 20706392 ~ 20707535 (+) True LOC120554009
XM_039792556.1 mRNA upstream 98855 20692960 ~ 20694611 (+) True LOC120554008
XM_039793639.1 mRNA upstream 157544 20595095 ~ 20635922 (+) True LOC120554627
XM_039793731.1 mRNA upstream 283552 20487667 ~ 20509914 (+) True LOC120554724
XM_039793629.1 mRNA upstream 313140 20459986 ~ 20480326 (+) False LOC120554612
XM_039793231.1 mRNA downstream 6867 20802267 ~ 20832663 (+) True fmnl2b
XM_039793203.1 mRNA downstream 81031 20876431 ~ 20886020 (+) True cavin2b
XM_039793634.1 mRNA downstream 92569 20887969 ~ 20889752 (+) True ebpl
XM_039793685.1 mRNA downstream 156752 20952152 ~ 20956272 (+) True eef1b2
XM_039793673.1 mRNA downstream 161549 20956949 ~ 20964585 (+) True zdbf2
XR_005638570.1 other upstream 283521 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 396147 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 559671 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 795799 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2611654 18176825 ~ 18181812 (+) True G235778
TU320664 other downstream 20336 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 117255 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 506926 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 612527 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 612527 21407927 ~ 21422915 (+) True G236461

Expression Profile