RNA id: TU320726


Basic Information

Item Value
RNA id TU320726
length 1944
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G236388
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20900986 ~ 20931759 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttgttggaggctctgaccactggcagcagcctcagaagagtCTCCTCTGatgcagagtatttcttcaggtcaaacacatccaaatcttcttctgatgacagtaagatgaagaccagagctgaccactgagcaggagacagtttatctgTGGATAGATGTCCTGATTTCAGGGACTTTTGGATCTCCTCCACTAGAGAatgatcattcagttcattcagacagtggaacagattgatgcttctctctgcagactgATTCTCATCCATCTTCTCTTCCCCAttgatcttcttcttgatgtatTTGACTGTTTCCTGATTGGTCTCTGAGctccttcctgtctgtgtcatcAGGCCTCGTAGgagattctgattggtctgcagtgaaagacccaggaggaagcggaggaacaagtccaggtgtccatttggactctgtaaggcctcgtccacagcactctggtacaactgtgttgatgttgtttgttcttctgacagcaggttgactccagagGTGGTcttgtccacagcactctggtagaaaCGTGTCTCTGCAGATAGAGGATACATTGCTTTTGCCTGGTAGAAATGTGTCTCAACAGGTTTATGGATTGTATGTCCCTGGTAGATctgtgttgatgttgtttgttcttctgacagcaggttgactccagagttggtgaacgtcagatggacatgaagagcagccagaaactcctgaacactcagatggatgaagcagaacaccttgtcctggtacaatcctctctcctctttaaagatctgtgtgaacactcctgagtacactgaggctgctctgatatcgatgccacactctgttaggtctgattcatagaagatcaggttgcctttctgcagctgctcaaaagccagttttcccagagactccATTATCGTCCTGCTCTCTTCACTCCAGTGTGGATctgtctcagctcctccatcatacttgatgTTCTTTACTTTGGtctgaaccaccaggaagtggatgtacatctcagtcagggtcttgggcagctctcctccctctctggtcttcaacatgtcctccagaactgtagcagtgatccagcagaagactgggatgtgacaCATGATATGGAGGCTGCatgatgtcttgatgtgggagatgattctgctggcctgctcctcatctttgaatctcttcctgaagtactcctccttctgtgggtcagtgaaccctctgacctctgtcaccatgtcaacacacccaggagggatctgattggctgctgcaggtcgtgtggttatccagaggcgagcagagggaagcagattcccccgaatgaggtttgtcagcagcacacccactgaggtggactttgtaacatcagtcaggattttagtgttgaggaagtccagaggaagtcgacactcatccagaccgtcaaagatgaacacaaccggGAACTCTTGAAAtctgcagattcctgcttctttggtttcactaaagaagtgatgaacaagttccaccaagctgtaatttctctctttcagcacattcagctctctgaaggtgaatggaaatgtgaactggatgtcctggttggctttgccttcagcccagtccagagtgaacttctgtgttaagactgttttcccaatgccagccactccctttgtcatcactgttctgattggttcatctcttccaggtggggttttaaagatgtcttcatgtctgattgttgtttctggtttgtctggtttcctggatgctgtttcaatctgtctgacctcatgttcagcattgacctctgcagtccctccctttgtgatgtagatctctgtgaacatctgattcagaagggttgggtttcctgctttagcaatcccctcaaacacacgCTGGAACTTCTTGTTTAGGTTAGATTTGAGTTTACGTCTACAAACTCCTGATGGACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320681 lncRNA upstream 13617 20845648 ~ 20887369 (+) False cavin2b
TU320684 lncRNA upstream 22016 20878290 ~ 20878970 (+) True G236359
TU320710 lncRNA upstream 27373 20870666 ~ 20873613 (+) False G236378
TU320709 lncRNA upstream 27373 20872282 ~ 20873613 (+) True G236378
TU320711 lncRNA upstream 27856 20870846 ~ 20873130 (+) True G236379
TU320746 lncRNA downstream 25208 20956967 ~ 20957756 (+) False zdbf2
TU320747 lncRNA downstream 30829 20962588 ~ 20965747 (+) True G236405
TU320749 lncRNA downstream 34637 20966396 ~ 20967733 (+) True G236407
TU320752 lncRNA downstream 44313 20976072 ~ 20978453 (+) False LOC120554011
TU320755 lncRNA downstream 48148 20979907 ~ 21070444 (+) True LOC120554011
XM_039793634.1 mRNA upstream 11234 20887969 ~ 20889752 (+) True ebpl
XM_039793203.1 mRNA upstream 14966 20876431 ~ 20886020 (+) True cavin2b
XM_039793231.1 mRNA upstream 68323 20802267 ~ 20832663 (+) True fmnl2b
XM_039792557.1 mRNA upstream 193451 20706392 ~ 20707535 (+) True LOC120554009
XM_039792556.1 mRNA upstream 206375 20692960 ~ 20694611 (+) True LOC120554008
XM_039793685.1 mRNA downstream 20393 20952152 ~ 20956272 (+) True eef1b2
XM_039793673.1 mRNA downstream 25190 20956949 ~ 20964585 (+) True zdbf2
XM_039793674.1 mRNA downstream 25190 20956949 ~ 20964585 (+) False zdbf2
XM_039792559.1 mRNA downstream 46646 20978405 ~ 21070422 (+) False LOC120554011
XM_039793675.1 mRNA downstream 80735 21012494 ~ 21026525 (+) True LOC120554650
TU320664 other upstream 79262 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 391041 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 503667 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 667191 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 903319 19996799 ~ 19997667 (+) True G236162
TU320869 other downstream 370567 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 476168 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 476168 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 479053 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 482478 21414237 ~ 21422915 (+) False G236461

Expression Profile