RNA id: TU320747


Basic Information

Item Value
RNA id TU320747
length 946
lncRNA type sense_over
GC content 0.50
exon number 4
gene id G236405
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20962588 ~ 20965747 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacagacacacacacacacacacacacctgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgtacagACTCAcctgtacacacagacagagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacacctgtACAGACTCAcctgtacacacagacagagatacacacacacacacacacacacacacacacacacacacagacagagacacacacagacagagatacacacacacacacacacacacagacagagatacatacacactcacCTGTACTgggttatacacacacacacacacagatatacacacacacacagagacacacacacacacagagacacacacacacacacagagacacagacacacacacacacagagacacacacacacagagacacatacacacacagagacacagacacacacacacacacacacacacacagagagacacagacacacacacacacagagagacacacacacacacacagagacacagacacacacacacacacagagacacacacacagacacacacacacacacacacagagagacacagacacacacacacacagagagacacacacacacagagacacacacacacacagagatacacacacacacacacacacagagacacacagaaacacacacacacacacacacacagacagacagacagatatggCCCTACTCTTCTGTACCGAGTCTTCCCACCCTCCCTGGCAGCCCCTGAACACACCAGCTGTCTGACGATGCGTTCGCTTGTCTCAGAGAAGTCGGGACGTTCAGGCTGGACTCAGCAGAACACTTTCACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320746 lncRNA upstream 4832 20956967 ~ 20957756 (+) False zdbf2
TU320723 lncRNA upstream 21131 20899018 ~ 20941457 (+) True G236387
TU320724 lncRNA upstream 30829 20900986 ~ 20931759 (+) False G236388
TU320726 lncRNA upstream 30829 20900986 ~ 20931759 (+) True G236388
TU320715 lncRNA upstream 41825 20892919 ~ 20920763 (+) True G236383
TU320749 lncRNA downstream 649 20966396 ~ 20967733 (+) True G236407
TU320752 lncRNA downstream 10325 20976072 ~ 20978453 (+) False LOC120554011
TU320755 lncRNA downstream 14160 20979907 ~ 21070444 (+) True LOC120554011
TU320756 lncRNA downstream 14160 20979907 ~ 21077796 (+) False LOC120554011
TU320761 lncRNA downstream 14819 20980566 ~ 20988411 (+) False G236413
XM_039793685.1 mRNA upstream 6316 20952152 ~ 20956272 (+) True eef1b2
XM_039793634.1 mRNA upstream 72836 20887969 ~ 20889752 (+) True ebpl
XM_039793203.1 mRNA upstream 76568 20876431 ~ 20886020 (+) True cavin2b
XM_039793231.1 mRNA upstream 129925 20802267 ~ 20832663 (+) True fmnl2b
XM_039792557.1 mRNA upstream 255053 20706392 ~ 20707535 (+) True LOC120554009
XM_039792559.1 mRNA downstream 12658 20978405 ~ 21070422 (+) False LOC120554011
XM_039793675.1 mRNA downstream 46747 21012494 ~ 21026525 (+) True LOC120554650
XM_039793660.1 mRNA downstream 61305 21027052 ~ 21047316 (+) True LOC120554642
XM_039793661.1 mRNA downstream 61305 21027052 ~ 21047316 (+) False LOC120554642
XM_039793662.1 mRNA downstream 61305 21027052 ~ 21047316 (+) False LOC120554642
TU320732 other upstream 45811 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 140864 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 452643 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 565269 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 728793 20208329 ~ 20233795 (+) False prkx
TU320869 other downstream 336579 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 442180 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 442180 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 445065 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 448490 21414237 ~ 21422915 (+) False G236461

Expression Profile