RNA id: TU320752


Basic Information

Item Value
RNA id TU320752
length 239
lncRNA type sense_over
GC content 0.51
exon number 2
gene id LOC120554011
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20976072 ~ 21077796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCGGGGTCGTTGggggacaacacacacaagctattcttcttcttctgcactGAGATAAACGCTGGAgcttttcttctccttcttcttctgcaCTGAGATAAACGCTGAGACTCCCAGCCATCGTCATCACAGAGTTTGGCTGAGGCACAGACACGAAGTTAGATGAGCTTGTGAGGCTGGTGTGAAAATGAAGCGCTCCCTGGGTATCTGTCTGCTGTTCGGCTCCGCTCTGAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320749 lncRNA upstream 8339 20966396 ~ 20967733 (+) True G236407
TU320747 lncRNA upstream 10325 20962588 ~ 20965747 (+) True G236405
TU320746 lncRNA upstream 18316 20956967 ~ 20957756 (+) False zdbf2
TU320723 lncRNA upstream 34615 20899018 ~ 20941457 (+) True G236387
TU320755 lncRNA downstream 1454 20979907 ~ 21070444 (+) True LOC120554011
TU320756 lncRNA downstream 1454 20979907 ~ 21077796 (+) False LOC120554011
TU320761 lncRNA downstream 2113 20980566 ~ 20988411 (+) False G236413
TU320759 lncRNA downstream 2657 20981110 ~ 20988411 (+) False G236413
TU320760 lncRNA downstream 2657 20981110 ~ 20988411 (+) True G236413
XM_039793673.1 mRNA upstream 11487 20956949 ~ 20964585 (+) True zdbf2
XM_039793674.1 mRNA upstream 11487 20956949 ~ 20964585 (+) False zdbf2
XM_039793685.1 mRNA upstream 19800 20952152 ~ 20956272 (+) True eef1b2
XM_039793634.1 mRNA upstream 86320 20887969 ~ 20889752 (+) True ebpl
XM_039793203.1 mRNA upstream 90052 20876431 ~ 20886020 (+) True cavin2b
XM_039793675.1 mRNA downstream 34041 21012494 ~ 21026525 (+) True LOC120554650
XM_039793660.1 mRNA downstream 48599 21027052 ~ 21047316 (+) True LOC120554642
XM_039793661.1 mRNA downstream 48599 21027052 ~ 21047316 (+) False LOC120554642
XM_039793662.1 mRNA downstream 48599 21027052 ~ 21047316 (+) False LOC120554642
XM_039793663.1 mRNA downstream 48599 21027052 ~ 21044207 (+) False LOC120554642
TU320732 other upstream 59295 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 154348 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 466127 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 578753 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 742277 20208329 ~ 20233795 (+) False prkx
TU320869 other downstream 323873 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 429474 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 429474 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 432359 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 435784 21414237 ~ 21422915 (+) False G236461

Expression Profile