RNA id: TU320755


Basic Information

Item Value
RNA id TU320755
length 990
lncRNA type read_through
GC content 0.45
exon number 5
gene id LOC120554011
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20976072 ~ 21077796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagtttggtgctgagtctgctgtgtgttttcaggatcGGCTATCCGCTGTTTCAGCTGTAAGGACTACACGGCCAGCTGCTCCAAACAACGAGAGTGTAGCTATGACGACGCATGCCTCACACTCAGCGAGAGAGggGGGATGACCTACCGTCAGTGTCTCAAGTATTCAGACTGTGAGTACGGCCGGCTGGCCCAGATGTTCCCCCAGGTTTCCAGTTTTACCTTCAAGTGCTGCAACTCCGACCTGTGTAACTCCGCCCCTTCTTGTCAGCAGCAAGCTCTGTGATTGGTCTGCTGGCCGCGGCCGCTGTGACGTGGTGGTGCGTCCACTGATacaccaccacaacaacaacaacaacagcaactacAGCAGCTTcgctaacagccaatcagaatcacaCAATGTTACAACTAATCTCATCTAGTTCAAGATGTCGGATAACAGGgtcaaaacagacagacaggcagagagacagacaggcaggcaagcaggcagacagacagacagacagacagacagacagacaggttgatTTGGAGAATGCTGACAGCTCTCTTCATGGTGGAAACTTTAACAGCTTTATATGTTTATATTATTAAAAGATTTAATATCCTTAAAGTCATGTTTCATGGAACCATGGTAACCATGGTATCTGTGGGTATCAGCTGTTTGACAGGAAACAGCGTCTCTAACTAcagaccttcaaaataaaagagtcTTTAATAACTTGTCTgatttaaatcaataaatggTGACAAACTGGAAACACTCTCTTCTTCGACTGATTTTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320752 lncRNA upstream 1454 20976072 ~ 20978453 (+) False LOC120554011
TU320749 lncRNA upstream 12174 20966396 ~ 20967733 (+) True G236407
TU320747 lncRNA upstream 14160 20962588 ~ 20965747 (+) True G236405
TU320746 lncRNA upstream 22151 20956967 ~ 20957756 (+) False zdbf2
TU320724 lncRNA upstream 48148 20900986 ~ 20931759 (+) False G236388
TU320794 lncRNA downstream 81969 21152413 ~ 21233973 (+) True G236440
TU320802 lncRNA downstream 123159 21193603 ~ 21247124 (+) False G236446
TU320805 lncRNA downstream 126981 21197425 ~ 21203222 (+) False G236448
TU320806 lncRNA downstream 126981 21197425 ~ 21202606 (+) False G236448
TU320808 lncRNA downstream 126981 21197425 ~ 21203222 (+) False G236448
XM_039793673.1 mRNA upstream 15322 20956949 ~ 20964585 (+) True zdbf2
XM_039793674.1 mRNA upstream 15322 20956949 ~ 20964585 (+) False zdbf2
XM_039793685.1 mRNA upstream 23635 20952152 ~ 20956272 (+) True eef1b2
XM_039793634.1 mRNA upstream 90155 20887969 ~ 20889752 (+) True ebpl
XM_039793203.1 mRNA upstream 93887 20876431 ~ 20886020 (+) True cavin2b
XM_039793676.1 mRNA downstream 28139 21098583 ~ 21120770 (+) True LOC120554651
XM_039792560.1 mRNA downstream 87517 21157961 ~ 21165554 (+) True LOC120554012
XM_039793690.1 mRNA downstream 95359 21165803 ~ 21191445 (+) True LOC120554666
XM_039793687.1 mRNA downstream 218919 21289363 ~ 21292223 (+) True LOC120554662
XM_039793688.1 mRNA downstream 297001 21367445 ~ 21371904 (+) True dph3
TU320732 other upstream 63130 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 158183 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 469962 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 582588 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 746112 20208329 ~ 20233795 (+) False prkx
TU320869 other downstream 231882 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 337483 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 337483 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 340368 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 343793 21414237 ~ 21422915 (+) False G236461

Expression Profile