RNA id: TU320792


Basic Information

Item Value
RNA id TU320792
length 1418
lncRNA type intronic
GC content 0.39
exon number 4
gene id G236438
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21376477 ~ 21378434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacaatcacagacacacaatcacagtaACACAaaatcacagacacacaatcacagacacacaatcacagacacacaatcacagaaacacaatcacagacacacaatcacagacacacaatcacagacacacaatcacagacacacaatcacagaaacacaatcacaacccaatacaacacacaatcacagcacacaatcacagacacactatcacagacacacaatcacagacacacaatcacagacacacaatcagaacacacatcacagacacacaatcacatagacacacaatcacagacacacaatcacatagacacacaatcacagacacacaatcacagacacacaatcacagacacacaatcacagtaacacacaatcacatagacacacaatcacagacacacaatcacagacacacaatcacagacacaatcacagacacacaatcacagtaacacacaatcacagtaacacacaatcacatagacacacaatcacatagacacacaatcacagtaacacacaatcacagtaacacacaatcacataacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacactatcacatagacacacaatcacatagacacactatcacatagacacacaatcacatagacacactatcacatagacacactatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacactatcacATAGACACACTATCACATAGACACACtatcacatagacacacaatcacatagacacacatcacatagacacacaatcacatagacacacaatcacatagacacactatcacatagacacacaatcacatagaCACACTATCACAAACCAcatcacatagacacacatatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagacacacaatcacatagaCACAAAGGGTTAAAGggtcactttattatccccgagGGGCAATTGGCATTACAGCCAGCAGTAACAAATaccaaacagcaaacagcaacaaagaaacacaacaacagtatAACAATTAAAATTTGGATTCACAGGATCCTATTAACAATGGGGATAACAGCAGGGATGAATGATCTTTTAAATCTCTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320896 lncRNA upstream 3098 21373121 ~ 21373379 (+) True G236492
TU320870 lncRNA upstream 15242 21302326 ~ 21361235 (+) False G236467
TU320795 lncRNA upstream 31309 21246564 ~ 21345168 (+) True G236441
TU320793 lncRNA downstream 10036 21388470 ~ 21390145 (+) True G236439
TU320829 lncRNA downstream 45851 21424285 ~ 21435060 (+) True G236459
TU320830 lncRNA downstream 45851 21424285 ~ 21435565 (+) False G236459
TU320843 lncRNA downstream 45851 21424285 ~ 21611817 (+) False G236459
TU320910 lncRNA downstream 51746 21430180 ~ 21617586 (+) True G236501
XM_039793688.1 mRNA upstream 4573 21367445 ~ 21371904 (+) True dph3
XM_039793687.1 mRNA upstream 84254 21289363 ~ 21292223 (+) True LOC120554662
XM_039793690.1 mRNA upstream 185032 21165803 ~ 21191445 (+) True LOC120554666
XM_039792560.1 mRNA upstream 210923 21157961 ~ 21165554 (+) True LOC120554012
XM_039793676.1 mRNA upstream 255707 21098583 ~ 21120770 (+) True LOC120554651
XM_039793684.1 mRNA downstream 225058 21603492 ~ 21605036 (+) True LOC120554659
XM_039793689.1 mRNA downstream 233485 21611919 ~ 21612646 (+) True LOC120554665
TU320869 other upstream 15242 21302326 ~ 21361235 (+) False G236467
TU320732 other upstream 459700 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 554753 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 866532 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 979158 20383386 ~ 20397319 (+) False cd99
TU320853 other downstream 29493 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 29493 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 32378 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 35803 21414237 ~ 21422915 (+) False G236461
TU320831 other downstream 226516 21604950 ~ 21634001 (+) False G236459

Expression Profile