RNA id: TU320800


Basic Information

Item Value
RNA id TU320800
length 287
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G236446
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21193603 ~ 21247124 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacagacacacagacacacacagacacacagacacacacacacacacacacacacagatacacacacacacacacacacacacacacacacagatacacacacacacacacacacacacacacacacacacacacacacagatacacacacacacagacacacacagatacacacacacacacacacacacacacagatacacacacacacacacacacacacacacggatacacacacacagatacacacacacacacacacatatacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320794 lncRNA upstream 7184 21152413 ~ 21233973 (+) True G236440
TU320810 lncRNA upstream 17464 21197907 ~ 21223693 (+) False G236448
TU320813 lncRNA upstream 17464 21197907 ~ 21223693 (+) False G236448
TU320805 lncRNA upstream 37935 21197425 ~ 21203222 (+) False G236448
TU320808 lncRNA upstream 37935 21197425 ~ 21203222 (+) False G236448
TU320820 lncRNA downstream 49053 21296177 ~ 21330483 (+) True G236455
TU320870 lncRNA downstream 55202 21302326 ~ 21361235 (+) False G236467
TU320868 lncRNA downstream 71889 21319013 ~ 21335530 (+) True G236467
TU320896 lncRNA downstream 125997 21373121 ~ 21373379 (+) True G236492
TU320797 lncRNA downstream 128313 21375437 ~ 21387338 (+) True G236443
XM_039793690.1 mRNA upstream 49712 21165803 ~ 21191445 (+) True LOC120554666
XM_039792560.1 mRNA upstream 75603 21157961 ~ 21165554 (+) True LOC120554012
XM_039793676.1 mRNA upstream 120387 21098583 ~ 21120770 (+) True LOC120554651
XM_039793669.1 mRNA upstream 177240 21049514 ~ 21063917 (+) False LOC120554645
XM_039793687.1 mRNA downstream 42239 21289363 ~ 21292223 (+) True LOC120554662
XM_039793688.1 mRNA downstream 120321 21367445 ~ 21371904 (+) True dph3
XM_039793682.1 mRNA downstream 125491 21372615 ~ 21392410 (+) True cdk15
XM_039793683.1 mRNA downstream 125492 21372616 ~ 21392410 (+) False cdk15
XM_039793684.1 mRNA downstream 356368 21603492 ~ 21605036 (+) True LOC120554659
TU320732 other upstream 324380 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 419433 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 731212 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 843838 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 1007362 20208329 ~ 20233795 (+) False prkx
TU320869 other downstream 55202 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 160803 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 160803 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 163688 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 167113 21414237 ~ 21422915 (+) False G236461

Expression Profile