RNA id: TU320806


Basic Information

Item Value
RNA id TU320806
length 442
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G236448
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21197425 ~ 21223693 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtctgtgtgtctctgggtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtctgagACAGGACCAGAAACAGGTCCTGCACCCCTAAccctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgtgggggggtgtggttcttacagggaggtgtgttcaggtgcattctgggcgtgcttgtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320756 lncRNA upstream 119629 20979907 ~ 21077796 (+) False LOC120554011
TU320755 lncRNA upstream 126981 20979907 ~ 21070444 (+) True LOC120554011
TU320761 lncRNA upstream 209014 20980566 ~ 20988411 (+) False G236413
TU320759 lncRNA upstream 209014 20981110 ~ 20988411 (+) False G236413
TU320760 lncRNA upstream 209014 20981110 ~ 20988411 (+) True G236413
TU320803 lncRNA downstream 4162 21206768 ~ 21247124 (+) False G236446
TU320801 lncRNA downstream 26098 21228704 ~ 21247124 (+) True G236446
TU320800 lncRNA downstream 38551 21241157 ~ 21247124 (+) False G236446
TU320795 lncRNA downstream 43958 21246564 ~ 21345168 (+) True G236441
TU320820 lncRNA downstream 93571 21296177 ~ 21330483 (+) True G236455
XM_039793690.1 mRNA upstream 5980 21165803 ~ 21191445 (+) True LOC120554666
XM_039792560.1 mRNA upstream 31871 21157961 ~ 21165554 (+) True LOC120554012
XM_039793676.1 mRNA upstream 76655 21098583 ~ 21120770 (+) True LOC120554651
XM_039793669.1 mRNA upstream 133508 21049514 ~ 21063917 (+) False LOC120554645
XM_039793687.1 mRNA downstream 86757 21289363 ~ 21292223 (+) True LOC120554662
XM_039793688.1 mRNA downstream 164839 21367445 ~ 21371904 (+) True dph3
XM_039793682.1 mRNA downstream 170009 21372615 ~ 21392410 (+) True cdk15
XM_039793683.1 mRNA downstream 170010 21372616 ~ 21392410 (+) False cdk15
XM_039793684.1 mRNA downstream 400886 21603492 ~ 21605036 (+) True LOC120554659
TU320732 other upstream 280648 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 375701 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 687480 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 800106 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 963630 20208329 ~ 20233795 (+) False prkx
TU320869 other downstream 99720 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 205321 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 205321 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 208206 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 211631 21414237 ~ 21422915 (+) False G236461

Expression Profile