RNA id: TU320856


Basic Information

Item Value
RNA id TU320856
length 413
RNA type TUCP
GC content 0.47
exon number 4
gene id G236461
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21407927 ~ 21422915 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCATTGAATTTAAAGGTCAACAACCCTCTGCTGAAAAGAGagtggaccaggacagctcagaggttcccagtggtcagtctgcccagcagcatcaaaTACACCTGGACTCCATCtttatgctgctggaggagaacatcgtcacttttgtgaagaacgagctgaagaagatccagaagcttttgagtccagattacccagaatgctcaGAGAGTAAGAGGGAGaatgaggatgaagagcagaagaggaacagagaggcatttctgaagatcacactgcacttcctgaggagaatgaagcaggacgagctggctgaccgtctgcagagcaGAATTCCAGCTGGAGTTTGTAAGCGTAAACTCAAATCTAACCTAAACaagaagttccagtgtgtgtttgaggggattgctaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320793 lncRNA upstream 24092 21388470 ~ 21390145 (+) True G236439
TU320797 lncRNA upstream 26899 21375437 ~ 21387338 (+) True G236443
TU320792 lncRNA upstream 35803 21376477 ~ 21378434 (+) True G236438
TU320896 lncRNA upstream 40858 21373121 ~ 21373379 (+) True G236492
TU320868 lncRNA upstream 78707 21319013 ~ 21335530 (+) True G236467
TU320829 lncRNA downstream 1370 21424285 ~ 21435060 (+) True G236459
TU320830 lncRNA downstream 1370 21424285 ~ 21435565 (+) False G236459
TU320843 lncRNA downstream 1370 21424285 ~ 21611817 (+) False G236459
TU320910 lncRNA downstream 7265 21430180 ~ 21617586 (+) True G236501
TU320916 lncRNA downstream 62939 21485854 ~ 21525535 (+) True G236506
XM_039793682.1 mRNA upstream 21827 21372615 ~ 21392410 (+) True cdk15
XM_039793683.1 mRNA upstream 21827 21372616 ~ 21392410 (+) False cdk15
XM_039793688.1 mRNA upstream 42333 21367445 ~ 21371904 (+) True dph3
XM_039793687.1 mRNA upstream 122014 21289363 ~ 21292223 (+) True LOC120554662
XM_039793690.1 mRNA upstream 222792 21165803 ~ 21191445 (+) True LOC120554666
XM_039793684.1 mRNA downstream 180577 21603492 ~ 21605036 (+) True LOC120554659
XM_039793689.1 mRNA downstream 189004 21611919 ~ 21612646 (+) True LOC120554665
TU320869 other upstream 53002 21302326 ~ 21361235 (+) False G236467
TU320732 other upstream 497460 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 592513 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 904292 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 1016918 20383386 ~ 20397319 (+) False cd99
TU320831 other downstream 182035 21604950 ~ 21634001 (+) False G236459
TU320835 other downstream 182035 21604950 ~ 21612252 (+) False G236459
TU320842 other downstream 182035 21604950 ~ 21611817 (+) False G236459
TU320943 other downstream 199583 21622498 ~ 21623439 (+) True G236530
TU320865 other downstream 203023 21625938 ~ 21633094 (+) True G236466

Expression Profile