RNA id: TU320931


Basic Information

Item Value
RNA id TU320931
length 679
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G236520
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21526536 ~ 21530680 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctgagagtgtccagtctccagagagGATCCTTCAGTCCCGCTGACAGTAGCTTCACTCCTGAttctcctggatgattgtagctcaggtccagctctctcagatagGAGTGGTTGGTgctcagagctgagaccagagaataacagccttcctctgagatcagacagcctgacatactgcaaacacacagaacaacacacacaggaaccctCTGTTGACACATGGAGCCATGTGTTTGCTTTATGTTCGTTTGTTCTCCAGGTACATTTTGGTCCAGATTtagaataaatctttaaaatcgTCTGtggtatttaattatttaacaacaaaagtaaacaatGAAAAATCCTCATGGAAAGTAACTCTGAGTCTAATAACTACTGCCCAAATTCATCATATCAGCAGACATAAAGCTAGATGTCAGCTGTTTTATCAACTAAAGTTAATCAGACTGTAAATGTTCATCAGTTGAATGGGTTAAtgaatcctgacctgagagtctccagtgtgcagtgtggactcttcagtccatcagagatcagcttccctcctgaatcctgcaggttgttgttactcaggtccagctctctcagactagaggactgggagctgagaactgaggacagagcttcacagcttctctctgacagattacagccactcagtctggagagacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320916 lncRNA upstream 1001 21485854 ~ 21525535 (+) True G236506
TU320917 lncRNA upstream 34804 21490294 ~ 21491732 (+) True G236507
TU320830 lncRNA upstream 90971 21424285 ~ 21435565 (+) False G236459
TU320829 lncRNA upstream 91476 21424285 ~ 21435060 (+) True G236459
TU320793 lncRNA upstream 136391 21388470 ~ 21390145 (+) True G236439
TU320875 lncRNA downstream 42994 21573674 ~ 21574822 (+) True G236471
TU320882 lncRNA downstream 74453 21605133 ~ 21674674 (+) True G236478
TU320874 lncRNA downstream 76255 21606935 ~ 21641708 (+) True G236470
TU320909 lncRNA downstream 76758 21607438 ~ 21617586 (+) False G236501
TU320828 lncRNA downstream 78491 21609171 ~ 21612252 (+) False G236459
XM_039793682.1 mRNA upstream 134126 21372615 ~ 21392410 (+) True cdk15
XM_039793683.1 mRNA upstream 134126 21372616 ~ 21392410 (+) False cdk15
XM_039793688.1 mRNA upstream 154632 21367445 ~ 21371904 (+) True dph3
XM_039793687.1 mRNA upstream 234313 21289363 ~ 21292223 (+) True LOC120554662
XM_039793690.1 mRNA upstream 335091 21165803 ~ 21191445 (+) True LOC120554666
XM_039793684.1 mRNA downstream 72812 21603492 ~ 21605036 (+) True LOC120554659
XM_039793689.1 mRNA downstream 81239 21611919 ~ 21612646 (+) True LOC120554665
TU320853 other upstream 103621 21407927 ~ 21422915 (+) False G236461
TU320855 other upstream 103621 21407927 ~ 21422915 (+) True G236461
TU320854 other upstream 103621 21410812 ~ 21422915 (+) False G236461
TU320856 other upstream 103621 21414237 ~ 21422915 (+) False G236461
TU320869 other upstream 165301 21302326 ~ 21361235 (+) False G236467
TU320831 other downstream 74270 21604950 ~ 21634001 (+) False G236459
TU320835 other downstream 74270 21604950 ~ 21612252 (+) False G236459
TU320842 other downstream 74270 21604950 ~ 21611817 (+) False G236459
TU320943 other downstream 91818 21622498 ~ 21623439 (+) True G236530
TU320865 other downstream 95258 21625938 ~ 21633094 (+) True G236466

Expression Profile