RNA id: TU320980


Basic Information

Item Value
RNA id TU320980
length 1346
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G236560
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20839612 ~ 20841745 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtgtgtctgtctgtctgtgtgtctgtgtgtctgtctgtctgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtgtgtgtgtgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtctgtctgtctgtgtgtctctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtatctgcaggtGTGCGTGTGCGTAGTGTGTCTCTGCCGGTGATGAAGACTACTTCCTGTTGTTTTGGGGGTCCAGGATACTCTGACCTCTACGTGACATCAGCCAGTCTGGGCCTCGACCAATCAGAGCGCAGAGAGCAGCCGCTGGCTGGACACACCTTCAGGgtaacAGGACTCGGGGTTAAAGGTCGTCCTTCGAACTCGTTCTCTGGATGATGTtcaaacagccaatcacagcgcagaTCACCCGCTGGACCTGATCACCAGTTTGACTCATTAATCAGAAActgtaatgaatgaatgaatgaatgaatgaatatctAGTGTGGGGGGGTTAGGGTTTCTTCAGTAAGTAGTTTAATGTGCTGGACAATGTAGAGTGAGCCCTCACTCTACATTATCTTTTGCTAAATAAATGGGttatgttaaagagtaagatcattttagtttaacatgaaacagccccgaaatcaccatcaccaaactacaccagactccatcaggacttttagcgtgtatacacgctaaaagtcctgattatttacatggagtctggtggggatatgctggctctatacacgctaaaagtcctggttatttacatgaagtctggtggggatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacactaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacactaaaagtcctgattatttacatggagtctggtgtagtttggtgatggtgatttcggggctgtttcatgttaaactaaaaggatcttactctttaactaaaaggtctctctctgtagggaccataatgttgtcagacacacaAACCAGGGTGGAACAGAAACCCCTCTAAATAACACTTATTGCTGATTTTCAAGAATTGTTTGTAGTTTAATACTGTAAAAAAGCCTAAATAAATGATTAagtgacagccaatcagaaaccaGAAGGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638381.1 lncRNA downstream 845 20824834 ~ 20838767 (-) True LOC120554363
TU321078 lncRNA downstream 8876 20830357 ~ 20830736 (-) True G236644
XR_005638382.1 lncRNA downstream 14797 20821734 ~ 20824815 (-) True LOC120554364
TU320994 lncRNA downstream 37964 20801362 ~ 20801648 (-) True G236569
TU320660 lncRNA downstream 70447 20768705 ~ 20769165 (-) True G236353
TU320972 lncRNA upstream 3906 20845651 ~ 20886276 (-) False G236558
TU320974 lncRNA upstream 3906 20845651 ~ 20886276 (-) False G236558
TU320976 lncRNA upstream 3906 20845651 ~ 20886276 (-) False G236558
TU320977 lncRNA upstream 3906 20845651 ~ 20886276 (-) False G236558
TU321044 lncRNA upstream 17909 20859654 ~ 20918008 (-) True G236610
XM_039793228.1 mRNA downstream 37342 20794346 ~ 20802270 (-) True LOC120554361
XM_039793230.1 mRNA downstream 37407 20794346 ~ 20802205 (-) False LOC120554361
XM_039793229.1 mRNA downstream 37410 20794346 ~ 20802202 (-) False LOC120554361
XM_039793653.1 mRNA downstream 383549 20442981 ~ 20456063 (-) True LOC120554635
XM_039792917.1 mRNA downstream 459120 20375593 ~ 20380492 (-) False dhrsx
XM_039792558.1 mRNA upstream 3556 20845301 ~ 20850464 (-) True rgn
XM_039793201.1 mRNA upstream 11820 20853565 ~ 20867800 (-) True vps16
XM_039793202.1 mRNA upstream 13046 20854791 ~ 20867800 (-) False vps16
XM_039793665.1 mRNA upstream 51169 20892914 ~ 20920498 (-) True LOC120554644
XM_039793686.1 mRNA upstream 99243 20940988 ~ 20951865 (-) True arl11
TU320656 other downstream 78620 20760708 ~ 20760992 (-) True G236349
TU320640 other downstream 111185 20726403 ~ 20728427 (-) True G236340
TU320641 other downstream 111185 20726530 ~ 20728427 (-) False G236340
TU320553 other downstream 471179 20367341 ~ 20368433 (-) True G236277
TU320378 other downstream 1107075 19731319 ~ 19732537 (-) True G236111
TU321082 other upstream 1747 20843492 ~ 20853383 (-) False rgn
TU321084 other upstream 1747 20843492 ~ 20853383 (-) False rgn
TU321086 other upstream 2306 20844051 ~ 20853383 (-) False rgn
TU321079 other upstream 3616 20845361 ~ 20853383 (-) False rgn
TU321090 other upstream 20935 20862680 ~ 20863311 (-) True G236646

Expression Profile