RNA id: TU321000



Basic Information


Item Value
RNA id TU321000
length 600
lncRNA type sense_over
GC content 0.46
exon number 4
gene id G236572
representative True

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21069316 ~ 21077796 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctgtctgtctgtctgcctgcctgtctgcctgtctgtctgtctgtttttgacCCTGTTATCCGACATCTTGAACTAGATGAGATTAGTTGTAACATTGtgtgattctgattggctgttagcgAAGCTGCTgtagttgctgttgttgttgttgttgtggtggtgtATCAGTGGACGCACCACCACGTCACAGCGGCCGCGGCCAGCAGACCAATCACAGAGCTTGCTGCTGACAAGAAGGGGCGGAGTTACACAGGTCGGAGTTGCAGCACTTGAAGGTAAAACTGGAAACCTGAAAACAACAGAACTGTAGTTAGAACCAATGGGAACAACAGAACTGTAGTTAGAACCAATGGGAACAACACCTGGGACCAGAACCAATGGGAACAACAGAACTGTAGTTAGAACCAATGGGAACAACAGGACTGTAGTTAGAACCAATGGGAACAACAGAACTGTAGTTAGAACCAATGGGAACAACAGAACTGTAGTTAGAACCAATGGGAACAACAGGACTGTAGTTAGAACCAATGGGAACAACAGGACTGTAGTTAGAACCAATGGGAACAACAGAACTGTAGTTAGAACCAATGGGAACAACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU321122 lncRNA downstream 17243 21051507 ~ 21052073 (-) True G236673
TU321108 lncRNA downstream 39054 21029937 ~ 21030262 (-) True G236662
TU321103 lncRNA downstream 79516 20988518 ~ 20989800 (-) True G236659
TU321104 lncRNA downstream 79516 20988518 ~ 20989800 (-) False G236659
TU321058 lncRNA downstream 80842 20958314 ~ 20988474 (-) True G236624
XR_005638557.1 lncRNA upstream 91999 21169795 ~ 21183925 (-) True LOC120554677
TU321157 lncRNA upstream 113923 21191719 ~ 21199247 (-) True LOC120554675
XR_005638555.1 lncRNA upstream 114034 21191830 ~ 21199214 (-) False LOC120554675
TU321164 lncRNA upstream 115796 21193592 ~ 21247076 (-) True G236692
TU321166 lncRNA upstream 116201 21193997 ~ 21213372 (-) True G236693
XM_039793680.1 mRNA downstream 66047 20990890 ~ 21003269 (-) True ftcd
XM_039793681.1 mRNA downstream 67489 20990890 ~ 21001827 (-) False ftcd
XM_039793686.1 mRNA downstream 117451 20940988 ~ 20951865 (-) True arl11
XM_039793665.1 mRNA downstream 148818 20892914 ~ 20920498 (-) True LOC120554644
XM_039793201.1 mRNA downstream 201516 20853565 ~ 20867800 (-) True vps16
XM_039793658.1 mRNA upstream 49098 21126894 ~ 21149363 (-) True LOC120554641
XM_039793659.1 mRNA upstream 49098 21126894 ~ 21145155 (-) False LOC120554641
XM_039792561.1 mRNA upstream 124078 21201874 ~ 21242177 (-) True LOC120554013
XM_039792562.1 mRNA upstream 222485 21300281 ~ 21557021 (-) True LOC120554014
XM_039792563.1 mRNA upstream 564042 21641838 ~ 21651918 (-) False LOC120554015
TU320995 other downstream 117636 20941019 ~ 20951680 (-) False arl11
TU321090 other downstream 206005 20862680 ~ 20863311 (-) True G236646
TU321084 other downstream 215933 20843492 ~ 20853383 (-) False rgn
TU321138 other upstream 124119 21201915 ~ 21206810 (-) False LOC120554013
TU321003 other upstream 460706 21538502 ~ 21556981 (-) False LOC120554014
TU321228 other upstream 557052 21634848 ~ 21651877 (-) True LOC120554015
TU321045 other upstream 595896 21673692 ~ 21674838 (-) True G236611

Expression Profile