RNA id: TU321003



Basic Information


Item Value
RNA id TU321003
length 1002
RNA type TUCP
GC content 0.49
exon number 8
gene id LOC120554014
representative False

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21300281 ~ 21557021 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCTGTGACACAGTTTTTTCTCTCCGTGTGGAGCTCCAGCTGAAGgacccatcagagaccagacccTGCTGAACCTGAAAACAGCTGTATGTCTATGAAGAGTGTCCGGTCCATGGAGACACCACTACTTTAAAAAAGGAGGTGACCTGTAAGGGACAGGCCAATTAAAATGgtggagaggagaaggaagaggcCAAGACAGAAGGAAAGGGAGGAACATATTGAAATAAAGAGCCGAAGACAGAGgatccatcaaagaccagactctgctggacctgaacccagctgtgtgtcctttaaGATTGACCAGTCACATCAAGGCCTCATTGACTTTAAAGGAGAGCAACCCTCTGCTGAAAAGAGGATCCATCAGAGACCAGACtctgctgaacctgaacccagctatGTGTCCTTCAAGAGTGATCAGTCACATCAAGGCCTCATTGACTTTAAAGGAGCGCAACCCTCTGCTGAAAAGCGGATCCATGAAAGACCAGACTCTGctggacctgaacccagctgtgtgtcctttaaGAGTGACCAGTCACATCAAGGCCTCATTGACTTTAAAGGAGAGCAACCCTCTGCTGAAAAGAGGATCCATCAGAGACCAGCCTCtactgaacctgaacccagctgtgtgtccttcaagAGTGACCGGTCACATCAAGGCCTCATTGACTTTAAAGGAGCGCAACCCTCTGCTGAAAAGAGagtggaccaggagagATCAGAGTTTCCCAGTGATCAGACTGCCCATcagcatcaaacacacctggactccatatttatgctgctggaggatGACATCGTCACTTTTGTGAAGAAcgagctgaagaagatccaaaaggttctgagtccagattacccagaatgctcagagagtcagaggaagGGTGAGGATGAAGATCAGAggagcagagaggcatttctgaagatcacactgcacttcctgaggagaatgaagcaggacAAGCTGGCTGACCGTCTGCAGAACAGTAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005638550.1 lncRNA downstream 24432 21501548 ~ 21514070 (-) False LOC120554671
XR_005638552.1 lncRNA downstream 24432 21502932 ~ 21514070 (-) False LOC120554671
XR_005638551.1 lncRNA downstream 24432 21502932 ~ 21514070 (-) True LOC120554671
XR_005638554.1 lncRNA downstream 56985 21473964 ~ 21481517 (-) True LOC120554674
TU321059 lncRNA downstream 58678 21471966 ~ 21479824 (-) True G236625
XR_005638549.1 lncRNA upstream 651 21557632 ~ 21559040 (-) True LOC120554670
TU321061 lncRNA upstream 16784 21573765 ~ 21651255 (-) True G236627
TU321221 lncRNA upstream 50454 21607435 ~ 21617571 (-) True G236740
TU321029 lncRNA upstream 51799 21608780 ~ 21622208 (-) True G236595
TU321057 lncRNA upstream 57012 21613993 ~ 21674364 (-) True G236623
XM_039792561.1 mRNA downstream 296325 21201874 ~ 21242177 (-) True LOC120554013
XM_039793658.1 mRNA downstream 389139 21126894 ~ 21149363 (-) True LOC120554641
XM_039793659.1 mRNA downstream 393347 21126894 ~ 21145155 (-) False LOC120554641
XM_039793677.1 mRNA downstream 463247 20965938 ~ 21075255 (-) False dytn
XM_039792563.1 mRNA upstream 84857 21641838 ~ 21651918 (-) False LOC120554015
XM_039792564.1 mRNA upstream 94985 21651966 ~ 21691088 (-) True LOC120554016
XM_039793671.1 mRNA upstream 143724 21700705 ~ 21725016 (-) True LOC120554648
XM_039793672.1 mRNA upstream 143725 21700706 ~ 21725016 (-) False LOC120554648
XM_039793670.1 mRNA upstream 143940 21700921 ~ 21725016 (-) False LOC120554648
TU321138 other downstream 331692 21201915 ~ 21206810 (-) False LOC120554013
TU320995 other downstream 586822 20941019 ~ 20951680 (-) False arl11
TU321090 other downstream 675191 20862680 ~ 20863311 (-) True G236646
TU321084 other downstream 685119 20843492 ~ 20853383 (-) False rgn
TU321228 other upstream 77867 21634848 ~ 21651877 (-) True LOC120554015
TU321045 other upstream 116711 21673692 ~ 21674838 (-) True G236611

Expression Profile