RNA id: XM_039793665.1


Basic Information

Item Value
RNA id XM_039793665.1
length 4102
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC120554644
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20892914 ~ 20920498 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccatatcctgatcatccagagaggacccatcagagaccagaccctgctgaacctgaacctgagcCCATCTGTGTGTTTATGAAGAGTGTCTGGTCCATTGAGACACCACTACTTTAAAAAAGAAGGAGACCTGTAAGGGACAGGCCAATTAAAATGGAAGAGATGGGAAGGAAGAGGCGAGGACATAAGGAAAGGGAGGAACATATTGAAATAAAGAGACAAAGACTGAGTATCCATCAGAGACCAGACCTTGCTGGACCTGGACCTGAACATGAAACTGATCCTGAAGCTAAAACTAAACCTGatcctgaacccagctgtgtgtccttaaAGAGCGACTGGTCAAATGGTCGCCTCATTAACTTTAAAGGAGAGCAACCCACTGCTGCAAAGAGtacccatcagagaccagagcctgctggacctggacctggacctgaaCCTAAAACTAAACCTGatcctgaacccagctgtgtgtcctttaaGAGTGACCAGTCACATCAAGGCCTCATTAACGTTAAAGAAGAGCAACCCTCTGCTGCAACGAGGATCCATCAAAGACCAGACtctgctgaacctgaacccagctgtatGTCCTTCAAGAGTGACCAGTCAAAAGGTCACTATATGAACTTTAAAGGTCAACAACCATCTGCTGAAAAGAGagtggaccaggagagctcagaggttcccagtggtcagtctgcccagcagcatcaaacacacctggactccatatttatgctgctcGAGGAGAACATCGTCACTTTTGTGAAGAACGAGCTGAAGAAGATGCAGAAGGTTCTGagtccagattacccagaatACTCAGAATACAGAATAGAGAGTAAGAGGAAGGATGAGaatgaagagcagaggagcagcagcgaagcatttctgaagatcacactgcacttcctgaggagaatgaagcaggacGAGCTGGCTGACCGTCTGCAGAGCAGAAGTCCATCAGGAGTTTGTAGACATAAACTCAAATCTAACCTAAACAAGAAGTTCCAGcgtgtgtttgaggggattgctaaagcaggaaacccaacccttctgaatcagatgttcacagagatctacatcacaaagggagggactgcagaggtcaatgctgaacatgaggtcagacagattgaaacagcatccaggaaaccagacaaaccagaaacaacaatcagacatgaagacatctttaaaaccccacctggaagagatgaaccaatcagaacagtgatgacaaagggagtggctggcattgggaaaacagtcttaacacagaagttcactctggactgggctgaaggcaaagccaaccaggacatccagttcacatttccattcaccttcagagagctgaatgtgctgaaagagagaaattacagcttggtggaacttgttcatcacttctttagtgaaaccaaagaagcaggaatctgcagaTTTCAAGAGTTCccggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcctcaacactaaaatcctgactgatgttacaaagtccacctcagtgggtgtgctgctgacaaacctcattcgggggaatctgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgggtgtgttgacatggtgacagaggtcagagggttcactgacccacagaaggaggagtacttcaggaagagattcaaagatgaggagcaggccagcagaatcatctcccacatcaagacatcatGCAGCCTCCATATCATGtgtcacatcccagtcttctgctggatcactgctacagttctggaggacatgttgaagaccagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagaCCAAAGTAAAGAAcatcaagtatgatggaggagctgagacagATCCACACTGGAGTGAAGAGAGCAGGACGATAATggagtctctgggaaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctaacagagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagaggattgtaccaggacaaggtgttctgcttcatccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacgttcaccaactctggagtcaacctgctgtcagaagaacaaacaacatcaacacagATCTACCAGGGACATACAATCCATAAACCTGTTGAGACACATTTCTACCAGGCAAAAGCAATGTATCCTCTATCTGCAGAGACACGtttctaccagagtgctgtggacaagACCACctctggagtcaacctgctgtcagaagaacaaacaacatcaacacagttgtaccagagtgctgtggacgaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagaatctcCTACGAGGCCTgatgacacagacaggaaggagCTCAGAGACCAATCAGGAAACAGTCAAatacatcaagaagaagatcaaTGGGGAAGAGAAGATGGATGAGAATcagtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgatcatTCTCTAGTGGAGGAGATCCAAAAGTCCCTGAAATCAGGACATCTATCCAcagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaagaagatttggatgtgtttgacctgaagaaatactctgcatCAGAGGAGactcttctgaggctgctgccagtggtcagagcctccaacaaagctctactgagtggctgtaatctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtgaagctgatctctgatggactaaagagtccacactgcacactggagacaCTCAGtctgtcgggctgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccctcccatctgagagagctggacctgagctacaatcatccaggagactcaggagtgaagctactGTCAGCGGGACTGGAGGATCctctctggagactggacactctcagggtggagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcacactggacacaaacacagtgaacagaaaactcaaactgtctgacaacaacaggaaggtgacattaGTGAAGGAgtatcagccatatcctgatcatccagagaggtttgagaTCTGGgatcagctgctgtgtagagatggtctgactggtcgctgttactgggaggtagaGACGAGAGGAACTGTTGagatatcagtgagttacagaggaatcaggaggagaggagtcAGTGGTGACTGTGAGTTTGGAtttaatgatcagtcctggagtctgaggTGCTCTTATGGTGGTTACGGTGTCTGGCACAATAACAGAAGaacatccatctcctcctcctcttctatctctggtagagtagcagtgtatgtggactgtcctgctggctctctgttcttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcagacTCTCTATCCTGGGTTTGGGTTCTGGTATACTGGtgcctcagtgtctctgtgtcctctgtaggacggagagtctcctcctgtttctcactgctgatcagttgagtctgtacaggatcacacttacagaaatatTTCGGCTTATTGTTATgaactaatgaatgaactttgtatAAAATAATCCAGAATGATTGAACAGATTCCTGGTGAACGTTGTAAACTTctttaaagatggaagctgtgatcatcaaattgtagaaatgccgttgacttgtgtcatgtttagttttgaattctgtctcttttcacaataaaagcataaagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320972 lncRNA downstream 6638 20845651 ~ 20886276 (-) False G236558
TU320974 lncRNA downstream 6638 20845651 ~ 20886276 (-) False G236558
TU320976 lncRNA downstream 6638 20845651 ~ 20886276 (-) False G236558
TU320977 lncRNA downstream 6638 20845651 ~ 20886276 (-) False G236558
TU320971 lncRNA downstream 6638 20883265 ~ 20886276 (-) True G236558
XR_005638545.1 lncRNA upstream 82 20920580 ~ 20927156 (-) True LOC120554667
TU321058 lncRNA upstream 37816 20958314 ~ 20988474 (-) True G236624
TU321103 lncRNA upstream 68020 20988518 ~ 20989800 (-) True G236659
TU321104 lncRNA upstream 68020 20988518 ~ 20989800 (-) False G236659
TU321108 lncRNA upstream 109439 21029937 ~ 21030262 (-) True G236662
XM_039793201.1 mRNA downstream 25114 20853565 ~ 20867800 (-) True vps16
XM_039793202.1 mRNA downstream 25114 20854791 ~ 20867800 (-) False vps16
XM_039792558.1 mRNA downstream 42450 20845301 ~ 20850464 (-) True rgn
XM_039793228.1 mRNA downstream 90644 20794346 ~ 20802270 (-) True LOC120554361
XM_039793230.1 mRNA downstream 90709 20794346 ~ 20802205 (-) False LOC120554361
XM_039793686.1 mRNA upstream 20490 20940988 ~ 20951865 (-) True arl11
XM_039793679.1 mRNA upstream 45440 20965938 ~ 21075255 (-) False dytn
XM_039793677.1 mRNA upstream 45440 20965938 ~ 21075255 (-) False dytn
XM_039793678.1 mRNA upstream 45440 20965938 ~ 21075255 (-) True dytn
XM_039793680.1 mRNA upstream 70392 20990890 ~ 21003269 (-) True ftcd
TU321090 other downstream 29603 20862680 ~ 20863311 (-) True G236646
TU321082 other downstream 39531 20843492 ~ 20853383 (-) False rgn
TU321084 other downstream 39531 20843492 ~ 20853383 (-) False rgn
TU321086 other downstream 39531 20844051 ~ 20853383 (-) False rgn
TU321079 other downstream 39531 20845361 ~ 20853383 (-) False rgn
TU320995 other upstream 20521 20941019 ~ 20951680 (-) False arl11
TU321138 other upstream 281417 21201915 ~ 21206810 (-) False LOC120554013
TU321003 other upstream 618004 21538502 ~ 21556981 (-) False LOC120554014
TU321228 other upstream 714350 21634848 ~ 21651877 (-) True LOC120554015
TU321045 other upstream 753194 21673692 ~ 21674838 (-) True G236611

Expression Profile