RNA id: TU321082



Basic Information


Item Value
RNA id TU321082
length 775
RNA type TUCP
GC content 0.53
exon number 6
gene id rgn
representative False

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20843492 ~ 20853383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CGGAGCCTTCAGCTCGAGCAGAGTACACCTGTTGGACCCGTTTAAAACTTCTACAACTTTAAATAAGAGTGATGTCATCGGTGAAGGTGGAGTGTGTGGTGAAAGCGAGTGCTCTGATTGGTGAAGGGCCGGTGTGGGAGGAGTCAGACCAGACGCTGCTGTTTGTCGACATCGCCGGACACAAAATCAACCGCTGGAGTCCAACGACCAATCAGATGCAGTCTGTGGAGACAGagGACTCTGTGGGCTTTGTGGTTCCCCGTGTCTCTGGTGGTTATGTTGCCGGTGTGGGTCGCAGCATCGTGGCTGTTGATTGGTCAACTGAGATGATGACATCACTGGTGGAGGTGGACCAGGACAAACCGACCAATCGGCTGAACGACGGGAAAGTGGACCCGGCAGGACGCCTGCTGGCaggtACGATGGGGAAGGAGGAGAGACCGGCCGAAGTTCAGAAAGGACAAGGATCTCTGTTCTCTGTGGCCTCTGACCTCACTGTTACCAGACACCTGAGAcaggtggACATCTCTAACGGGATGGACTGGTCTTTGGAccagaaaacatttttctacatCGACAGTTTGTCTCTGACCGTCGACGCCTTCGACTACGACCTAAACACAGGAAACATCAGTAAGACTCACCTGTACCCTCTCACCTATACCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTATACCCTTTCACATTTACCCTCTCACCTGTTCCCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU320980 lncRNA downstream 1747 20839612 ~ 20841745 (-) False G236560
TU320981 lncRNA downstream 1747 20839612 ~ 20841745 (-) True G236560
TU320982 lncRNA downstream 1747 20839612 ~ 20841745 (-) False G236560
TU320984 lncRNA downstream 1747 20839612 ~ 20841745 (-) False G236560
XR_005638381.1 lncRNA downstream 4725 20824834 ~ 20838767 (-) True LOC120554363
TU321044 lncRNA upstream 6271 20859654 ~ 20918008 (-) True G236610
TU321055 lncRNA upstream 17617 20871000 ~ 20871638 (-) True G236621
TU321041 lncRNA upstream 17744 20871127 ~ 20874204 (-) True G236607
TU320979 lncRNA upstream 27536 20880919 ~ 20882181 (-) True G236559
TU320971 lncRNA upstream 29882 20883265 ~ 20886276 (-) True G236558
XM_039793228.1 mRNA downstream 41222 20794346 ~ 20802270 (-) True LOC120554361
XM_039793230.1 mRNA downstream 41287 20794346 ~ 20802205 (-) False LOC120554361
XM_039793229.1 mRNA downstream 41290 20794346 ~ 20802202 (-) False LOC120554361
XM_039793653.1 mRNA downstream 387429 20442981 ~ 20456063 (-) True LOC120554635
XM_039792919.1 mRNA downstream 463000 20375593 ~ 20380492 (-) False dhrsx
XM_039793201.1 mRNA upstream 182 20853565 ~ 20867800 (-) True vps16
XM_039793202.1 mRNA upstream 1408 20854791 ~ 20867800 (-) False vps16
XM_039793665.1 mRNA upstream 39531 20892914 ~ 20920498 (-) True LOC120554644
XM_039793686.1 mRNA upstream 87605 20940988 ~ 20951865 (-) True arl11
XM_039793679.1 mRNA upstream 112555 20965938 ~ 21075255 (-) False dytn
TU320656 other downstream 82500 20760708 ~ 20760992 (-) True G236349
TU320640 other downstream 115065 20726403 ~ 20728427 (-) True G236340
TU320641 other downstream 115065 20726530 ~ 20728427 (-) False G236340
TU320553 other downstream 475059 20367341 ~ 20368433 (-) True G236277
TU320378 other downstream 1110955 19731319 ~ 19732537 (-) True G236111
TU321090 other upstream 9297 20862680 ~ 20863311 (-) True G236646
TU320995 other upstream 87636 20941019 ~ 20951680 (-) False arl11
TU321138 other upstream 348532 21201915 ~ 21206810 (-) False LOC120554013
TU321003 other upstream 685119 21538502 ~ 21556981 (-) False LOC120554014
TU321228 other upstream 781465 21634848 ~ 21651877 (-) True LOC120554015

Expression Profile