RNA id: TU321103


Basic Information

Item Value
RNA id TU321103
length 1231
lncRNA type intronic
GC content 0.46
exon number 2
gene id G236659
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20988518 ~ 20989800 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTTGATATGCATTCCTGCTGCTGAcaagaaaaacttccactacCCTACTTGATCATCCTTCCAGCTCCGCCTCTGATAAAGGTACTAAACATGAATTTACTTACAGCCTCCATAAAATAATTCAGCCTCAGTCCAAGAGTCCAACAGTGAGTGAGATTTAATATTAAACTAGAGTCCAACATATCAATGATCATAAAGTATTATTGTTCATCTGATTCAGTTCCTAAAAGTCCAGttggtaaaataaatgatgctcAGACACAAGCAGTTCCAGTGTGAACCGGTCTTTCAGTTCTCCCTCTTGCTTCTATCTTTCCTTTTTAGTGAAGTCTTTGAGCTCTTCCTTCATCTGATCAGTCATTGAACACAAGGCTGCACAGATGAGGCAATATGATGATTTTATCTTCAGAAACTTGTGTCCGACTCCTCTGAAACTCCTCCATGTCTCTCAGAGTCTTTCCAGCCTGAAGTTCAGCTGATCTTTGCTCCAACTTCTCCCACCTCCTCTTTATCTCCTCCAGCTCCTTCTTCAGCCGTCCAACCACCTCCATCAACTCTTTCCCTTTCTCTATACTGCTGTTGTCattcatttttgttgttatatCTACACCAACAACCACAACTGTTCCTCCTCGTATTGCTACTACTCCTGCTCCTAACCctactcctgctgctcctcctcctcctgcagcaggagctcctgctgctcctcctcctcctgcagcaGGAGCTTCTGCAGCCATCTCTCTAAACTCTCCAACAATCTCTCTCATCTTCTCCTCACTGCTGTCAAACACCTCGATGAATGAAGCTGCATGTTGAGTAAGTTTGCTTATTAATCCAGACTGAACAAGAGGGTCATGCGAACCCCCCATCTTCAGGTCTCCTGGTCCTCCTGGAGGTGTAGAGATCTCCTCTTCAGAGTGATGAAGAGTCTCCTGGTCCTCCTGGAGGTGTAGAGAGCTCCTCTTCAGAGTGATGAAGAGTCTCCTGGTCCTCCTGGAGGTGTAGAGAGCTCCTCTTCAGAGTGATGAAGAGTCTCCTGGTCCTCCTGGAGGTGTAGAGATCTCCTCTTCAGAGTGATGAAGAGTCTCCTGGTCCTCCTGGAGGTGTAGAGATCTCCTCTTCAGAGTGACGAAGAGTCTGCTGGTCCTCCTGGAGGTGTAGAGATCTCCTCTTCAGAGTGATGAAGACTTTAAATCAGACTGTGATCTGATGGGATCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321058 lncRNA downstream 44 20958314 ~ 20988474 (-) True G236624
XR_005638545.1 lncRNA downstream 61362 20920580 ~ 20927156 (-) True LOC120554667
TU321063 lncRNA downstream 78507 20906215 ~ 20910011 (-) False LOC120554644
TU321093 lncRNA downstream 92386 20894240 ~ 20896132 (-) True G236649
TU320971 lncRNA downstream 102242 20883265 ~ 20886276 (-) True G236558
TU321108 lncRNA upstream 40137 21029937 ~ 21030262 (-) True G236662
TU321122 lncRNA upstream 61707 21051507 ~ 21052073 (-) True G236673
TU320999 lncRNA upstream 79516 21069316 ~ 21077796 (-) False G236572
TU321000 lncRNA upstream 79516 21069316 ~ 21077796 (-) True G236572
XR_005638557.1 lncRNA upstream 179995 21169795 ~ 21183925 (-) True LOC120554677
XM_039793686.1 mRNA downstream 36653 20940988 ~ 20951865 (-) True arl11
XM_039793665.1 mRNA downstream 68020 20892914 ~ 20920498 (-) True LOC120554644
XM_039793201.1 mRNA downstream 120718 20853565 ~ 20867800 (-) True vps16
XM_039793202.1 mRNA downstream 120718 20854791 ~ 20867800 (-) False vps16
XM_039792558.1 mRNA downstream 138054 20845301 ~ 20850464 (-) True rgn
XM_039793680.1 mRNA upstream 1090 20990890 ~ 21003269 (-) True ftcd
XM_039793681.1 mRNA upstream 1090 20990890 ~ 21001827 (-) False ftcd
XM_039793658.1 mRNA upstream 137094 21126894 ~ 21149363 (-) True LOC120554641
XM_039793659.1 mRNA upstream 137094 21126894 ~ 21145155 (-) False LOC120554641
XM_039792561.1 mRNA upstream 212074 21201874 ~ 21242177 (-) True LOC120554013
TU320995 other downstream 36838 20941019 ~ 20951680 (-) False arl11
TU321090 other downstream 125207 20862680 ~ 20863311 (-) True G236646
TU321084 other downstream 135135 20843492 ~ 20853383 (-) False rgn
TU321138 other upstream 212115 21201915 ~ 21206810 (-) False LOC120554013
TU321003 other upstream 548702 21538502 ~ 21556981 (-) False LOC120554014
TU321228 other upstream 645048 21634848 ~ 21651877 (-) True LOC120554015
TU321045 other upstream 683892 21673692 ~ 21674838 (-) True G236611

Expression Profile