RNA id: TU321200



Basic Information


Item Value
RNA id TU321200
length 316
lncRNA type intronic
GC content 0.39
exon number 2
gene id G236721
representative True

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21418096 ~ 21420001 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTCCATCCGTTCgttttttataacaaaatgtCCCATCTGCGGGGCCAACCAAAACGGTCTCGTCAGCTTCTTCGTTCATGTTCACTGTGGTTTGTTGTTGTCTGAAGTCATTGacgctagttgGTGCTCCAGTATAATCGGTCCGCCCAAACTCATCCAGTGAGAAATGTCCCGTGGTGCAAAAATAAGTGTgattaaaatgcataaaaaattaatttttttgtgtaaTTAATTAACGCATTAAAGtctgtaattaattaatcttaattaacGCGTTAAAGTCCCGGCCCtagttattactgtcgctctgttgaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU321052 lncRNA downstream 37091 21375437 ~ 21381005 (-) True G236618
TU321189 lncRNA downstream 40092 21377379 ~ 21378004 (-) True G236713
TU321186 lncRNA downstream 41212 21376125 ~ 21376884 (-) True G236712
TU321185 lncRNA downstream 44718 21373114 ~ 21373378 (-) True G236711
XR_005638548.1 lncRNA downstream 60754 21355047 ~ 21357342 (-) True LOC120554669
TU321202 lncRNA upstream 3252 21423253 ~ 21423548 (-) True G236723
TU321203 lncRNA upstream 3616 21423617 ~ 21423824 (-) True G236724
XR_005638556.1 lncRNA upstream 35017 21455018 ~ 21469164 (-) True LOC120554676
TU321059 lncRNA upstream 51965 21471966 ~ 21479824 (-) True G236625
XR_005638554.1 lncRNA upstream 53963 21473964 ~ 21481517 (-) True LOC120554674
XM_039792561.1 mRNA downstream 175919 21201874 ~ 21242177 (-) True LOC120554013
XM_039793658.1 mRNA downstream 268733 21126894 ~ 21149363 (-) True LOC120554641
XM_039793659.1 mRNA downstream 272941 21126894 ~ 21145155 (-) False LOC120554641
XM_039793680.1 mRNA downstream 414827 20990890 ~ 21003269 (-) True ftcd
XM_039792563.1 mRNA upstream 221837 21641838 ~ 21651918 (-) False LOC120554015
XM_039792564.1 mRNA upstream 231965 21651966 ~ 21691088 (-) True LOC120554016
XM_039793671.1 mRNA upstream 280704 21700705 ~ 21725016 (-) True LOC120554648
XM_039793672.1 mRNA upstream 280705 21700706 ~ 21725016 (-) False LOC120554648
XM_039793670.1 mRNA upstream 280920 21700921 ~ 21725016 (-) False LOC120554648
TU321138 other downstream 211286 21201915 ~ 21206810 (-) False LOC120554013
TU320995 other downstream 466416 20941019 ~ 20951680 (-) False arl11
TU321090 other downstream 554785 20862680 ~ 20863311 (-) True G236646
TU321086 other downstream 564713 20844051 ~ 20853383 (-) False rgn
TU321003 other upstream 118501 21538502 ~ 21556981 (-) False LOC120554014
TU321228 other upstream 214847 21634848 ~ 21651877 (-) True LOC120554015
TU321045 other upstream 253691 21673692 ~ 21674838 (-) True G236611

Expression Profile