RNA id: XM_039792539.1


Basic Information

Item Value
RNA id XM_039792539.1
length 6910
RNA type mRNA
GC content 0.50
exon number 30
gene id hecw2b
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 13797432 ~ 14008423 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaaccttttcatttcacttttaccggaggctgtattaccgagggtcagcggtgctgcgcccgggctctggagcaccggagccggtTTGGAAGCCGAGGAAGGATCGGCGGTGCCCGGGCCGCATGGAGGTCTCCCTTCACCACTCTCCTCTCTGTGGATCATAGGAACACCCCGTCATCACCCCATCCTCCTAGACAGAGCAGCAGAAGGATTTCCAGATCGCCTTTCATGCTTAATTTCTAATCTCCCACATCTCCCACTTTCCTTTTATAATGGGTACCGGAATGATTTACAAAGTACTCCCTTAATGCAAGACATTGCTCGGCTCTTGACACTAAAGTGGTTGTCCGAATGGACAAGTGTCCTAGGGTGTTAAGAGAGATAATAAACATCGACATTCACAGTGGAAACATATCCAATGCCTGAtctagagagagaaaagggcaaaaaaagagagaggttCAACTATGGTTCAAACTGCCTCATAACAACTTGAATGATGAGTAGTAGAACCTGGGAACTCTGAAGTGCCTTATCCAAGGGCAGCAGGGCCAAAGAAATGTAAATCAAGAAACCCAGACGTCTTCTTTTTTAACTTGCTTTGCACAGTGTACTGCTGTCGTGATCACTCCATTCATCCTTCTGTAACTCCATACAGCCATTTGTTGCTGCTTCAGTTAGATCTAGCAGTGCTAAAGAACCTACGTgttcctttctttttctgtaacccctcccccccccgcctcctcctctttgttttccttttttggcCCACCCATTTGGCCTCCACTCTCTTGCAACGGCCATCCTGCCCCCCCGCCCCCGTCACCCTCCCTCTCTACCTCCtctgccccctcctcccctcaccatcaccaccaccatccTCAACTTCAGCCCTACTCATATCACCACCTACTCTCCGTCCCTCCCCCTTGCTTCTTGCCCCCTCCCTTCTCCGCCTTCTCGTCGGCGGGAACCATGGCGATGGCTGCCACTGCCTCCTGCTCTCCCTCATCCCCATCATCCGCCAATGGCAGCGCCCGGGAGCACCTCCTGGCGGTGCGCCGGCGCACCCCTCACACCCGGCCGTACACAATTGGTCCAGAAAACCTCACCAGTATGACGGTGCAGGGCACAGTCGGTACCTCTGCACCTTCCTCCTCTACTATGTCATCAGGGAGCCAACCAGAAACAGCCGGGGTGGGGCTCCAGCGGGCCAATAGCGACACAGACCTGGTGACATCAGACAGCCGCTCATCGCTCACGGCATCTACATACCAGCTGACTCTAGGCCATAGCCACTTGGTCATCTCCTGGGACATCAAGGAGGAAGTGGATGCCACCGACTGGATTGGCTTGTACCACATCGATGAGACATGTGTGGCCAATGTATGGGACTCCAAGAATCGTGGAGTGAATGGCACCCAGAGAGGACAGATCGTGTGGAAACTGGAGCAAGGACCCTACTTCATGGAGTCAGAGACTAAGATCTGCTTTAAATACTATCATGGTGTAAGTGGAGCATTAAGAGCAACAACACCTTGCATCACTGTCAAGAACCCTGGAGTACCgGTGGGCAGTGAAGGCCAAGTGGAGGACCAAACAGGGACTGAGCACTGCCGAAAACTAGTCAGCTTCACCTTATCAGACATTCAGGCAGTGGGTCTGAAGAAGGGCATGTTCTTCAACCCGGACCCCTACCTGAAGATGTCCATTCAGCGTGGAAAGAGGAGCGGCCTCCACAAGTTCACTCACCATGGCCAGGAGAGACGCTCCTCCATCATAGCCAACACCACCAACCCTGTGTGGCACGGGGAGAAATACACCTTTGTGGCTCTGATGACTGACGTGTTGGAGATCGAGGTTAAGGATAAGTTTGCCAAGAGCCGACCAATTATCAAGCGATTTCTTGGTCAGCTGATCATCCCTGTGCAGAGACTTCTGGAGGGGCCAACAACTGATGATCAGCCAGTCAGCTACAGCCTGTGTCGTCGTCTCCCTACAGACCATGTGAGCGGGCAGCTTCTGTTCAGGGTGGATATCACCTCCACCGGacatgaagaaGCCTCCCCAGACGCTTTGGGAACCATCTTAGGTGGCACAATAAATTGTGACCCCGGAAGTCCCTCAGACGACGAAGACCTTCCTcacccttcctcttcctcacgTGTTGCATACAGATCTTATCCCACAGGCCCTGATGAGGGCTCCCTGTTAGTCAACGGTGCTTGTTATTATGGCGATGACAGCGTGTGGCGGGAGCCTGGGCATATGGAAGAGGAGGATCTGCATTCTGTGCCTCTGGGCAGCCAAACCCATCGACAAGTGTCACTCAACGACTACCTGGATGCCATCGAGGCTCCCAGGAGCTCAGGGGACCGAGCTCTGGCAGGGCCTTCCCCAAAACTCCGCTCCAGCTTTCCAACAGACACACGCCTTAATGCCATGCTGCACATAGACTCCGATGAGGATGAGGAGATGGCAGAGCAACACAGGGAGCAACAGGAGATGAGGACACAGCAGAGCCCAGACTTATCGAGAAGATCGGCTACATCTGAATCTCTACATGGGAACGAGCGTTCAAAAGGAGAGGAGCCACAGGGGCAGATTGGAGCTGGGACTGGAAATGGGACAACAGAGGCAGGTTCCTCTTCCAGTGTTCAGCCTGAAACTGAGCCTGCAGGGGCTCAACCTGGAACTGCAGAAAGTGTATTCCAAACACAGGCAGAAACATCAACAGCTGGGACTGCAGAGGTTGCTGGAGCGGCAGCTAAGGCTGCACACAACACTGGGGAAACTTCAAGCTTATCTCAGTCATCAGTGGCTGAGTCAGCTGCAGTAGCTGGGTCAAGGAAGCCTCTGGTGGAATGTACCTGTcaggagcagagcagagcaaacCAGGAAGTACCCTGCAATCCCTCACTTGGTCTCCTTTCACCCATTCAGGAGGTGGAGACAAGAAAAGTGGCACCAAAGgcggaggaggaaggggagtcATCGAGCAGCGAGCCAAACAGACCAGTAGCAGCAGCTGCTCCTACAAGCAGCATCATAGCTGACCAAGGAGGAGGGACTTCTGAAGTTGgtgcagGTACCACAGCTCAGGTTAATGGTCACCAATCTGTTCGCTCCCTGCCATCTGTCCGCCATGACATCAGTCGTTACCAGAGAGTAGACGAGCCACTACCGCCTAACTGGGAGGCTCGTATCGACAGCCACGGTCGGATCTTTTACGTGGACCACGTGAACAGAACCACAACTTGGCAGCGTCCCactgctcccccccccccgcagaCTCTCCAGAGGTCCAACTCCATACAGCAGATGGAGCAGCTGAACCGtagATATCAGAGTATACGGAGGACGATAACCAATGACTGCAGACCAGAGGAGCAGCCAGCCAATGAGCTGCTGACTGATGAGACTGACATGCACCCTTCCATCCCAGagctCCGTAGAGACAACAGTATGGCTCAGTCCAGTTCCAGGTCTCGCCTAACCCTGCTGCTTCAGTCCCCCAGCGTGAAGTTCCTCACCAGCCCTGACTTCTTCACTGTGCTGCATTCCAACCCTAGCGCCTACCGTATGTTCACCACCAACACGTGTCTGAAGCATATGATCAGTAAGGTTCGTCGGGATGCTCACCACTTTGAGCGCTACCAGCACAACAGGGATCTGGTGGCCTTCCTCAACATGTTCGCCAACATACAGGTGGAGCTGCCGAGAGGCTGGGAGATGAAGCATGACCACACCGGCAAGCCTTTCTTCGTGGATCATAATTGCCGTGCCACATCTTTCATTGACCCCCGGCTGCCTCTCCAGAGCACTCGGGCCCCGAGCCTCCTAGCTCACCACCAACACCTAACTCGCCAACGCAGCCACAGTGCCGGGGAGGTCAGCCCACGACGATTGGTGGGTGAAGACCCTCGTCAAGCCGGCCCACCCGTCTTGCCACGGCCTTCCAGCACCTTCACCTCTGCCAACAGGGGGCATTGCCAAGACGTTGTGCCAGTGGCTTACAATGACAAGATTGTGTCGTTTCTTCGTCAACCAAACATCTTTGAGATTTTGCAGGAGAGACAACCTGATTTCAACTGGAATCATTCACTCagGGAGAAGGTGCAGCTGATACGCACAGATGGAGGATCAGGATTGGCCAGGCTGTCAGGTGATGCTGATCTTGTCATGCTACTAAGgACAAAAGACCGAGCAATGAACAGTACTCAGAGAGCTAATGCCAGAGCCCCAGCACCTTACAAGAGAGATTTTGAAGCCAAACTGCGCAACTTCTACAGGAAACTGGAAACTAAAGGCTACGGCCAAGGACCAGGGAAGCTAAAGTTGATCATCCGTCGTGACCATCTGCTGGAAGATGCCTTCAACCAGATCATGTGCTATTCCCGTAAAGACCTGCAGCGCAGCAAGCTCTACGTCAGCTTCATTGGGGAGGAGGGgttGGACTACAGCGGGCCTTCCAGAGAGTTTTTCTTCCTTGTTTCCAGGGAGCTATTCAACCCTTATTATGGTTTATTTGAGTATTCTGCCAATGACACCTACACCGTCCAGATCAGCCCCATGTCCGCCTTTGTAGACAATCACCAGGAATGgttCCGTTTCAGTGGTCGCATTCTAGGTTTGGCACTGATCCATCAGTACCTGCTGGATGCCTTCTTCACCAGACCCTTCTATAAAGGCCTACTgcgcatTCTCTGTGACCTGAGTGACCTGGAGTACCTGGACGAGGAGTTTCACCAGTCCCTTCAGTGGATGAAGGACAACGACATAGAAGACATGCTGGACCTCACTTTCACCGTCAATGAAGAAGTCTTCGGACAGATAACAGAAAGGGAGTTGAAGCCTGGCGGAGCCAACATCCCTGTGTCAGAGAAGaacaaaaaggaatacattgagCAGATGGTGAAGTGGAGGATAGAGAGAGGAGTTGTGCAGCAGACTGACAGCCTGGTCAGAGGTTTCTACGAAgtggTGGATGCCAGGCTAGTATCAGTGTTTGATGCAAGGGAGCTGGAGCTAGTGATCGCCggcacagctgagattgactTATCAGACTGGAGGAACAACACAGAGTACAGAGGAGGTTACCATGACAGCCATATTGTAATCCGGTGGTTCTGGGCAGCAGTGGAGAGGTTCAACAACGAACAGAGACTACGGCTCCTGCagTTTGTGACCGGTACATCCAGTATTCCTTATGAGGGCTTTGCTTCTCTGCGAGGCAGCAATGGACCCCGCAGGTTTTGTATGGAGAAGTGGGGGAAGGTCACAGCACTGCCCAGAGCTCATACCTGTTTCAACCGGCTGGACCTGCCACCATACCCGTCCTTCTCAATGCTCTATGAGAAGATGCTGACCGCAGTAGAGGAGACCAGCACCTTTGGGTTGGAATGAACCTTGTCCCAAACACCTACCCAAAGCCTACCCAAATCTCAAGGATTGCTTCTGGTAGTGAAGAGGTAGCCATGATGGACAAAGGTTCAAAAGCTGGATTTAATGTATGGCTTGAGTAAATTTATAATATAGCAGAGGCTGATAAGACCTTTGAACCATTAAGCTGCACTCTCACCTTTTGAAATGTACAGAGGTAAACACTTATTTTTGGTTGCATGTGCACATATTTCGCACTTACTTAGTAACACACACCTGAATGATGTGATGAATGAAGACCCACACTGCCTTTGAGACCAGAATCCTAACTGCCAGGATTTGACGAGTCAGAGCccaggttttttttctctttgataccaggagtttaaagtttaagaAGATGCAACCACTGCCAAAAGCTGAGTGGACTCAGCCTCTTTTATTCTAGTGTCGATGGACCTCAAAAGGTTATACACCTGTCCAGAACTGTGAGCTTCAGTGTCTTCTTGTAGTTATTtcttaaagtctttaaacgcccATCTGATATAACTTTTGGTAAAGTTTGTGGAATTTTCCTGTGAACTTCTACAGCTAATTTTGAAGTCCAGACAGATGTATTGTTACAGATTTCATCtgcaagaaaaagtgattttctaATGATGTTATTTTAATCTAAATATGTGATGTAGATTGTGTGGGAAGTGTTTTTGAACCCGATCTGGATCAATTGGAAAAACATATTTGGCCACCACTTACAAATTACATatgtatgtctatttattttgattttatttgattgatttgctttgatttgattgcgtcttatttatttattcgaAAGTAGTCTAAACTCAGATTGAAAGTAAATTCTATATCCAGTCATGCAAAGTAAATTAAATCTCCACTGAAACTGAAACACCGCTACtggtgtcaaaaacacacttagGTCATCTGATTTTAAGATGCCATTTTAAGTCCACTTTATTATGTGTCTTCCCCAACCCCCATACCCAACAGATGGTTGACAGCACCGCCCTTTTCTTTACCTGAGTGTCCAAAGCTGTGTCACATATGCATGTGACACAGCTCggctgcggttactgtaaaacacgcaTAAGGCTTTTGAAACCATTCTTAGTCTGGCCCCTTGTCTGAGACTTGTTTGccatgggagaccctaccaggagctcCAGTCAACACAGCTctcaggttcatagggacacacaaacaTCTCCACCACAATAAGGTGATGATTCCAGAATCATCACCTTATTGTGAGGAACAAGCAAATTCTGTTGAATTCAAAATTTCatcaaataattataataattattataattataaataattacataattTCCCTCCCTTAATGAactgctctctgtctgttttaCTATAATGTACCAAAGTTTTGAACCTTAACCAGCTGCTCACTATCCATATCTAACCCCAACCCAACAAACCTACTCTTGAATATAAATGTTTGTCAAGCACTTcttctaaaaataaaatgtcctcACTCTA

Function

GO: NA

KEGG:

id description
K12168 HECW2; E3 ubiquitin-protein ligase HECW2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318467 lncRNA downstream 292946 13498088 ~ 13504486 (-) True G234527
TU318470 lncRNA downstream 295313 13501600 ~ 13502119 (-) False G234527
TU318466 lncRNA downstream 299565 13486967 ~ 13497867 (-) True G234526
TU318463 lncRNA downstream 357621 13430981 ~ 13439811 (-) True G234523
TU318421 lncRNA downstream 591472 13202922 ~ 13205960 (-) True G234491
TU318594 lncRNA upstream 80584 14089007 ~ 14089210 (-) True G234638
TU318597 lncRNA upstream 82516 14090939 ~ 14091260 (-) True G234641
TU318623 lncRNA upstream 107432 14115855 ~ 14144870 (-) True G234664
XR_005638304.1 lncRNA upstream 121330 14129753 ~ 14131767 (-) False LOC120554065
XR_005638303.1 lncRNA upstream 121330 14129753 ~ 14131767 (-) True LOC120554065
XM_039793522.1 mRNA downstream 85598 13706250 ~ 13711834 (-) True LOC120554566
XM_039792867.1 mRNA downstream 748836 13021048 ~ 13048596 (-) True zgc:65895
XM_039792868.1 mRNA downstream 767447 13021048 ~ 13029985 (-) False zgc:65895
XM_039792869.1 mRNA downstream 771888 13021048 ~ 13025544 (-) False zgc:65895
XM_039792859.1 mRNA downstream 801437 12992838 ~ 12995995 (-) True mtrf1
XM_039793131.1 mRNA upstream 1842 14010265 ~ 14087482 (-) True gtf3c3
XM_039793273.1 mRNA upstream 192913 14201336 ~ 14290043 (-) False arhgap1
XM_039793275.1 mRNA upstream 192913 14201336 ~ 14290043 (-) False arhgap1
XM_039793274.1 mRNA upstream 192913 14201336 ~ 14290043 (-) False arhgap1
XM_039793272.1 mRNA upstream 192913 14201336 ~ 14290043 (-) False arhgap1
unassigned_transcript_1568 other downstream 685204 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 740745 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1566 other downstream 811544 12985817 ~ 12985888 (-) True trnae-uuc_66
TU318311 other downstream 843307 12953090 ~ 12954125 (-) True G234405
TU318109 other downstream 1504289 12287920 ~ 12293143 (-) False G234253
TU318891 other upstream 839411 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1569 other upstream 953938 14962361 ~ 14962433 (-) True trnar-ccg_4
XR_005638386.1 other upstream 961099 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1570 other upstream 1777898 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 1779904 15788327 ~ 15788399 (-) True trnak-cuu_17

Expression Profile