RNA id: XM_039792549.1


Basic Information

Item Value
RNA id XM_039792549.1
length 1755
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC120554000
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17862318 ~ 17877888 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAGCTGAGAAGAGACTTGACCCGGACCTCAGCGCTCTATTACTGCTGCTGGATCTGCATCCACTCCGCGCTGGCGGAGGACTGGACTCGAGTTCACACGGAGGACGAGCTCTTCAGGAGATTGTTTCGGGGCTACAGCAAGTGGACGCGTCCAGCGCAAAACATCACCGACGTGGTTATCGTGAAGTTTGGCCTCTCCATCGCACAGCTGATAGACGTGGATGAGAAAAACCAGATGATGACGACCAACGTGTGGCTGAAACAGGAATGGACGGACTATAAGCTGCAGTGGAGTCCCTCCGACTTCGACAACGTGACGTCCATCAGGGTCCCTTCTGAGCTCATCTGGGTGCCGGACATTGTGCTGTACAACAATGCAGACGGAGAGTTCGCCGTCACCCACATGACCAAGGCCCATCTCTTTCACACCGGCCGTGTCCGCTGGGTGCCCCCGGCCATCTACAAGTCCTCCTGCTCCATTGACGTCACCTTCTTCCCTTTCGACCAGCAGAGCTGCAAGATGAAGTTCGGCTCCTGGACGTACGACCGCGCCAAGATCGACCTGGAGCCCTTTGAGAACACGGTGAACCTGAAGGATTACTGGGAGAGTGGAGAGTGGGCGATTGTCAACGCCGTGGGCACCTACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCGGACATCACCTACTATTTTGTCATCCGCCGCCTCCCGTTGTTCTACACCATCAACCTCATTATCCCCTGCCTCCTCATCTCCTGCCTGACCGTCCTGGTCTTCTACCTCCCGTCGGACTGCGGCGAGAAGATCACGCTGTGCATCTCCGTGCTTCTGTCGCTCACCGTCTTCCTGCTGCTCATCACGGAGATCATCCCGTCCACGTCGCTGGTCATACCGCTGATCGGGGAGTATCTGCTCTTCACTATGATCTTTGTCACGCTGTCCATCGTCATCACCGTGTTCGTGCTGAACGTGCACCATCGCTCGTCGGCGACTCACACCATGCCTGGATGGGTCCGGCGGCTGTTCCTGTCGGCGGTGCCGCGCTGGCTGTGCATGAAGCGTCCGAAACATGGTGTCAGGCCTGTAAGGCGGTGCCACCTGACTGATGGACTCCTCCCCATCCAGACTCCGGGCCCCTCCCACAGCTCGCCCGCCTGGATCACTCAGGAGTCTGATATCCATCTCCATGGTTACCGGGAGGACGAGAACAGTTGCCGCAGGAGCCGCCAGCTCAACTCCTCGGATGCAGGTGACGAAATCCACTACTGCAATCTCCACGGTTACGCAAACGCTCATCGCTCGGGGAGGTTTAGGGGGAAGGTAGCCGGGCCACCAAGGATTTCtcccctctcttcttctttccccCCGTCTCTGGGTTACATACTCCTCCCACAGAGACACTCCTCACTCGGCTCGGACTGGGACACCCCTCCTGAGGAGCGTGGTTCGTTCCAGAGCCCACCTGCCTCTGTGCCGTCTCCGGCGGTGCTCTCGGCCCTGGAGGGGGTGACCTACATCGCAGAGCATCTCAGAGCCGAGGATGTAGACTTCTCAGTGAAGGAGGACTGGAAGTACGTTGGCATGGTTGTAGACCGGATCTTTCTGTGGATGTTCATCATCGTGTGTCTGCTGGGGACCGTCGGACTCTTCCTGCCTCCGTGGCTCTCTGGGATGTTTTAGAATCAAACTGGaaatcaaaaaagaaagaaaaaatgaatacaataattaatttaaaaaaaagtg

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0045202 synapse cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319874 lncRNA downstream 4040 17858066 ~ 17858278 (-) True G235695
TU319870 lncRNA downstream 7270 17854184 ~ 17855048 (-) True G235691
TU319867 lncRNA downstream 10977 17851068 ~ 17851341 (-) True G235688
XR_005638357.1 lncRNA downstream 154822 17688970 ~ 17707496 (-) True LOC120554284
TU319802 lncRNA downstream 317882 17512617 ~ 17544436 (-) True G235635
TU319895 lncRNA upstream 4515 17882403 ~ 17882848 (-) True G235715
TU319897 lncRNA upstream 11385 17889273 ~ 17889490 (-) True G235717
TU319901 lncRNA upstream 34979 17912867 ~ 17913167 (-) True G235721
TU319902 lncRNA upstream 52358 17930246 ~ 17930475 (-) True G235722
TU319903 lncRNA upstream 52644 17930532 ~ 17930985 (-) True G235723
XM_039793056.1 mRNA downstream 117061 17734758 ~ 17745257 (-) False s100b
XM_039793057.1 mRNA downstream 117221 17734758 ~ 17745097 (-) True s100b
XM_039793046.1 mRNA downstream 129378 17718997 ~ 17732940 (-) True LOC120554260
XM_039793047.1 mRNA downstream 129379 17718997 ~ 17732939 (-) False LOC120554260
XM_039793045.1 mRNA downstream 129380 17718997 ~ 17732938 (-) False LOC120554260
XM_039793040.1 mRNA upstream 88836 17966724 ~ 17967809 (-) True LOC120554256
XM_039793055.1 mRNA upstream 90078 17967966 ~ 17969403 (-) True LOC120554266
XM_039793053.1 mRNA upstream 93313 17971201 ~ 17973177 (-) True LOC120554265
XM_039793650.1 mRNA upstream 151948 18029836 ~ 18102031 (-) False LOC120554632
XM_039793645.1 mRNA upstream 151948 18029836 ~ 18081558 (-) True LOC120554632
TU319844 other downstream 117118 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 758801 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 953900 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 954496 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 954833 16907413 ~ 16907485 (-) True trnat-cgu_23
TU320378 other upstream 1853431 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 2489453 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 2848515 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 2848642 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 2882820 20760708 ~ 20760992 (-) True G236349

Expression Profile