RNA id: XM_039792551.1


Basic Information

Item Value
RNA id XM_039792551.1
length 6370
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC120554003
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 18357104 ~ 18402213 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTTATTGCAAGTCAGGAGGACTCTGCGGCTGTCTCTGCGCAtcctctccccccccctgcACACCGGGCAGCGAACTCCGAGACGTCCGAGTTCTAGGAAACACAAACGCATATtggtccttttttttctttttttgcacgGTTGTCACCGctgcagagggagggagggaggtctGCACACCGACCTCCGGGCTCCTTTACCGGGACGCAGCGCTGCGGTTGATCCGGTTTTGGTCATGGCGCAGCCGAGGAAACCCGGACACATTCGGCTTGGATGAAGGACGCGTTGCGCCTCGGATTCACCTAAAACTTCCCCCTCACTGAGGAAACCTAGGAACCCCGACATTTTTATCCCCCCGTAGCACGCCTTGATTTGAATGATTTGAGTCTCTGATTTGGTAGGCTAAATTCTGAACTCTCCCTTGGCCCGGGACGCAGGGATCGGGTAATCATCAAGGCCCCGCTGGTGCTCGCTTTGGGCACAACCTTGCCTAAAATACACTGATCCTCTGCTGTTTTTCCCCCCAGCCCGCtgtgtgcttgtttgtgtgtttgtacccGCGGCATTTGGAGGGGGGGCGGGGGCGGTGTAAACagtgccagcagcagcagcagccatgatGGATGCGGCGGAGTGCGGGGTGAGGGTGATGTGCCGCTTCAGGCCCCTGAACGAGTCCGAAATAAACAGAGGGGACAAATACATCCCCAAATTCAAAGAAGACGACACGGTGGTGATAACGGCAAGTCTGTCCGCTCACTCTATACAAGCTCTGTGTGCTGTCGTCTCCTACTCCGTGTGCCTGCCTTGTGTGGTCTCTGTCCTTCTTTCTGTGTCTGgcttttccgatactggtatcgggaCATCTTTACTTTTGAGAAAGCGTTCAGGGCAGGAGCCCCAGaagcatacacatacacatgatTGTAATATCGTTGTAATCATGGAGAAGTGTTTTTCATGCCTGTGCGTTCCAGATGTGCTGGGCGGCTACAACGGGACCATCTTCGCTTACGGACAGACGTCCTCCGGGAAGACACACACCATGGAGGGCAAACTGCACGACCCCCAGCTGATGGGAATCATCCCTCGCATTGCCCACGACATCTTTGACCACATCTACTCCATGGACGAGAACCTCGAGTTTCATatcaagGTTTCCTATTTTGAAATCTACTTGGACAAGATCCGAGACCTGCTGGATGTGTCGAAGACGAACCTCGCTGTGCATGAAGACAAAAACAGAGTGCCCTATGTCAAGGGTTGTACTGAGCGTTTTGTGTCCAGTCCGGAGGAGGTGATGGACGTCATCGATGAGGGCAAAAACAATCGGCATGTGGCAGTGACGAACATGAATGAGCACAGCTCTCGCAGCCACAGCATCTTCCTCATCAACATCAAGCAGGAAAACATGGAGACGGAGAAGAAGCTGTCTGGGAAGCTCTACCTGGTCGACCTAGCAGGCAGCGAGAAGGTCAGCAAGACGGGAGCAGAGGGAGCTGTGTTGGATGAGGCGAAGAACATCAACAAATCTTTGTCGGCGCTGGGAAACGTCATTTCAGCTCTAGCCGAGGGAACAAAAACCCATGTGCCGTACAGAGACAGTAAGATGACTCGCATCCTGCAGGACTCTCTGGGGGGAAACTGTCgcaccaccatcatcatctgCTGCTCGCCATCTGTCTACAACGAGGCCGAGACCAAGTCCACGCTCATGTTTGGACAGAGAGCCAAGACCATCAAGAACACGGTGTCGGTGAACCTGGAGCTGACAGCCGAGGAGTGGAAGAAGAAATacgagaaggagaaggagaagaacaAGAGCCTGAAAAACGTCATCCAGAGGCTGGAGGCGGAACTCAACCGCTGGAGGAACGGGGAGAACGTTCCTGAGGACGAGCAGCTGAGCTCTAAAGATCAGAAGGGCGCTGAGCCATACGACAACACTCCCGTCATCGACAACCTGCTGCCGCCAGGAGGAGGCGTCTCGCTCCCCGCCGACGAGCGGAGCCAATACGAGGACGACGTTAGCAACCTCTACAAACAGCTGGATGACAAGGATGATGAGATCAACCAACACAGTCAGTTGGCAGAGAAACTTAAGGAGCAGATGATCGACCAAGAAGAGCTGCTGGCGTCTACACGGCGCGACTACGAGAAGATCCAAGAGGAGCTGTGCCGGCTGCAGGCGGAGAACGAGCTGGCCAAGGAGGAGGTGAAGGAGgtgctgcaggccctggaggaGCTGGCCGTCAACTACGACCAGAAGAGCCAGGAGGTGGGGGAGAGAGACCGAGCCAACCTACAGctggtggaggagctgcagcacaAGACGGCGTTGCTGTCAGTGGTGCAGAGCGAGCTGAGTCAGCTGCAGGAGCTGAACGGCCTGCAGAGGAAGAGAGCCGCCGAGGTCCTCAACCTGCTGCTGCGAGACCTCAGTGACATCGGCACCATCATCGGCACCGGCGACGTGAAGACCGCCGcaTCCTCGGAGACGAAGGGTAACGGCTCGGCGGTGGAGGAAGAGTTCACCGTGGCTCGCCTCTACATCAGCAAGATGAAGTCTGAGGTCAAGTCTCTGGTGAACCGCAGCAAGCAGCTGGAGAGCTCTCAGGCCGACACCCACCGCAAGATCCAGGCCAATGAGAAGGAGCTGGCGTCCTGTCAGCTGCTCATCTCCCAGcaccAGGCCAAGATCCGCTCTCTGACAGATTACATGCAGAACATGGAGCAGAAGAAGCGGCAGCTAGAGGAGAGTCAGGACGCTCTGACCGAAGAGCTCGCCAAACTGCAGGCTCAGGAGAAAAGACACGAGGTGTtgggagaggagaaggaggacatCAGCAGACTGGATAGAGACGAGGACATCGAGAAAGCGCTGGAGGAGCAGCTGGAGAAGCACCGGGAGGCTCATCAGAAGCAGCTCAGCCGCCTCCGAGACGACATCGGAGACAAGCAGAGAATGCTGGACCAACTCACAGATCTAAACCAGGGTCTGCTACTGGAGCAGGAGAGACTCATGTCGGACTATGACAAACTGAAGGCCAAAGAGCAGGAGAAGGATGCAAAGCTACAGAAACTCATACTGCTTAATGAACAGAGGGAGCAGGCCAAAGAGGACTTGAAGGGCTTGGAGGAGACTGTGGCCAAAGAGCTGCAGACTCTGCACAACCTGCGCAAACTCTTCGTTCAGGACCTCACCACGCGGGTTAAGAAGAGTGCGGAGCTGGACTGTGAGGAGGGACTTGGCAACGTGGCCCAGAAACAGAAGATCTCCTTCCTGGAGAACAACTTGGAACAGCTCACCAAGGTCCACAAGCAGCTGGTTCGAGACAACGCAGACCTGCGCTGCGAGTTGCCCAAGCTTGAGAAGCGTCtgcgagccacggccgagcgagtCAAAGCCCTGGAGAACGCCCTGAAGGAGGCCAAGGAGAACGCCATGAGGGACCGCAAGCGCTACCAGCAGGAGGTGGACCGCATCAAAGAGGCTGTGCGGGCCAAGAACATGGCCAGGAGAGGCTTCTCCGCACAGATTGCGAAGCCCATCCGACCAGGCCATCATCCACCATCATCCCCCATCAGCAGCTCCATCAGAGCCGGAGGCGTCTACACCCACAACAACTGAAACAACGGACCGCAAATAACTGCCGCATGCTAAACCGCCCTACCTGGAACCACAAGCCCCGCCCCTCCTGTTGGAGCACCAATGGGAGGCCATCACGACAGACTGTCACCGCTCAGAGAAGCAACATCCAAACATCCTTAGTGTATATACTAATATAACATGTAGACATATTTAATTTGCTGAATGTAGATATCAGAGGCCTCATTTAGAAAATGTTCTTTTCTGTGATCCTCCTGATTATAGATCGTTTCATTTGTCTTCATAATTATGCTCTCTGTTGCATAATTACAAGCgtagcatttataaatgaggccctgAGTTTCTTTCTGAAGGATTGAGACACAAACGAGAAGTTTAGCAGCTTTCCAAAGCTTGAAGAGCCAGGGAGAATAGGTCAATCTTTAGGGGTATAGTTTAATCTTAAACCAGCattcatttgtttaaaaggaatagtttgacattttgggaaaacacGCCTATTccccgagagttagatgagaagatgtaTACCACTTTGTCCAAtcaatgtaaagaaaaaagacatgagagtggaatcaatcttctcatctaactacATAAGAAAAAAGTTTCTCATCTTGATAAAGTTGAAGGTTACAGCTCGAGCTATAGTTCAGGTGGAAGTGAAGGGCAGCCACTTGTtgcagacaaaaacattgacacACAGCTTGTTAACTGTTTGTGTTCCCCGCCTCTGCAAGGCCCTGGCTGCATTCCTATACTAACGCCTAATATCTATGCTAATACCGTGTGTTGACTTTggagtttttgtcactttttttttttacattgcccTACGTGACAATCGTCCAAAAAGAAACCCTGCgattctttaaaaaatgtttgtcCCCTGCTGAGATATTTTAACAGTTGAAAGGatttgtgattggctgtatcATACTGTAGTCCTGCAGGGACACTGACCAGCCAATCAGGCGTTCCCAGGACTCAGAACAGTACTACAGTCTGGTTTGTTATGTTACTAAAGTTCTGCACTCACTCTGTGAAGCTTctgatcagccaatcagagatgtTAAAAAACAGAGTTCATGacagacctaaaaaaaaaaaaacagctagaagaagaagaaaaattaataattttcTCTCGAAAACTCTCACTCTGCCACACCTTGTGCCTTTTGAAACCCCTGAACTTATATTTtcacaggtaaaaaaaaaacaccttgcaAGGTTTTGCAGAATAACTTCCACTTCCTCTTTCCAAACTGAAAGCGGAAACATTGTAATCAGTGAGACCCCTCCACCCTCTAATCAAAGATATATAAATGTCTGTGCTGTTTTGTCTTCGTGCTGCCAGTTTAGCATGTTTTTGAATGCACAATACTATCTTGAGATGGTACTTTTAGTTGCTGAGAGCGATGATACAAAGGGGCAACTTTTTAGGCAACAAAGCGCCAGGATCAGTGGTggagtctacgtgatacgcaggtatgaATATGGCGTAcacccactaggaaaggtcaagGATTTCCGTGTACCCACTTAGAAAAGCGCGAGGATAACGTTACGCAACGAAGATTGTTTCGCGACCGAACTTTCACACTTTCGTCTGTGTTGCGAGTCGCGTAGGAACAAACAACATGGTTGCTTGGCGGTCATGCTCTGCGAAATTTGAAATCAATATGAATCAATAAAGGAGatgtatttaacaaaaatgtaaccTTAGCCTGCCCCTGAAGCTATACTGCCGCTTCGGGTGACACTGCAGCAGACGTTAACGTTACAGAAACTACAGAACGTGAGGCGGCTGAGGCGGATGCTATACCAGGGTTTTCCCGCCGTTATAAGGTTCAGGTGCAAAACCCGAGCTGTTTTGGGCAGCACCTAAAGCCGAATGAATGTAACttaaagacttttctcagatctaatgattgtagttggacttctttggcaacttttgtctttaagctttttgagcgTTAGTtatttatctgctctagcttttccagcgttttagacacagatatggtgataataacagtccaaaatgatgtgaaaaagagCCGCAGAACTACCACAAAGGGACGCCAAATGACCCCAGGGACCCCAAATAACCCCAAAGGaaacaaaatgaccaaaaatagacccaacacgactacaaagagacgcaaaaacccacaaagagagaaaatcccacaaagagagaaaatcccacaaagagacactAAATTAATGAAAAACGTCAAATTTTTTTAAACCCCGCCGCCAAATACGCGCACCTAAGTCTTACACAAACTGAGGGAAAGCACTGTATACACGGTTAACGTTAAAAACATATGGGGGTGTCGCTCTTGGACGACCAAGTATAAAGCTgggagggggaaaaaatcacAGTATACGCACTACAAAAAACTAGACTGCACCACTGGGCAGGATTGTTGCCAAAGAATTTGGTGACCCGCAGCCTGATAATCAGCTTCTTTATTTGATGTTTGATGGTTTTGATTGTGGCTGTTTGGAGAGAAGTGGACAGCTGCTGTCACACTGAACATGACCAATAAATGAATGGAAGTGCATGGACTAGAGCTTGTGTTAAAGGCATGCTCAGGGACACCGTGCATTCACCTCATCATGATGAACATTTTGAGTttgctaaaatgtttttttgtttgttttggccGTGGCATCATATCTCCAAATATACCTACAACTGATGCAATTAAAGCTAATAAAAGATATATCTATTTAACTttca

Function

GO: NA

KEGG:

id description
K10396 KIF5; kinesin family member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320056 lncRNA downstream 56151 18252824 ~ 18300953 (-) True G235844
TU320063 lncRNA downstream 80290 18271078 ~ 18276814 (-) False LOC120554370
TU320066 lncRNA downstream 80290 18271142 ~ 18276814 (-) False LOC120554370
XR_005638536.1 lncRNA downstream 99598 18256943 ~ 18257506 (-) True LOC120554613
TU320026 lncRNA downstream 142936 18210503 ~ 18214168 (-) True G235816
TU320120 lncRNA upstream 2013 18404226 ~ 18406407 (-) False LOC120554371
TU320121 lncRNA upstream 2013 18404226 ~ 18406407 (-) False LOC120554371
TU320137 lncRNA upstream 131234 18533447 ~ 18534684 (-) True G235908
TU320159 lncRNA upstream 194786 18596999 ~ 18597208 (-) True G235929
TU320160 lncRNA upstream 346217 18748430 ~ 18748645 (-) True G235930
XM_039793175.1 mRNA downstream 3761 18342713 ~ 18353343 (-) True LOC120554329
XM_039793268.1 mRNA downstream 16685 18328508 ~ 18340419 (-) True LOC120554384
XM_039793240.1 mRNA downstream 30002 18271197 ~ 18327102 (-) False LOC120554370
XM_039793243.1 mRNA upstream 3856 18406069 ~ 18439418 (-) False LOC120554371
XM_039793242.1 mRNA upstream 3856 18406069 ~ 18439418 (-) True LOC120554371
XM_039793146.1 mRNA upstream 63735 18465948 ~ 18523016 (-) False acvr2ab
XM_039793145.1 mRNA upstream 63735 18465948 ~ 18523016 (-) True acvr2ab
XM_039792647.1 mRNA upstream 1121291 19523504 ~ 19529242 (-) True LOC120554050
TU319844 other downstream 611904 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 1253587 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 1448686 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 1449282 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 1449619 16907413 ~ 16907485 (-) True trnat-cgu_23
TU320378 other upstream 1329106 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 1965128 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 2324190 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 2324317 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 2358495 20760708 ~ 20760992 (-) True G236349

Expression Profile