RNA id: XM_039792556.1


Basic Information

Item Value
RNA id XM_039792556.1
length 1005
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC120554008
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20692960 ~ 20694611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAGATCACGCACAGAGCACAACATATATTGCCGGAAGAGACTACTGCTAAAGGAGAATCAAGAAGCGAGTGAACACGAACAGCAGAAGCAGCTACTGCAGCAGCGTGAGGCGATAGGACAAGATGCCACACAGTTGTATATATCCTGGCTGCGGTTTAAAAGCTAAAAAGTTCCATCCAGAGTCGTTCTATGATCTGCCGTTTCGATACAAAGACCCGGAGCTTCTACAACAGTGGCTTGTCGTTCTCAAAATGGACATCACAACGCCACTCGAGACGCTAAAAAAGAAGCGCTACCGTGTCTGTAGCAGACATTTCTATGATGACGACTTTTATTATCCAAGTAAAGTCAAGGACCCCAAAAAGTCGACTAGAGCTCTTCTGAAAAGGAACGCTATTCCACGAGTGGGACCACCGGCAGCGGACATAGTAGAGGCTGGAGAGCAACAGTCTGGTCAGGTGGTAATTGACATATCAGACATGATTGGACTACCTCAATCTACCCCTACAAAGAGCCATGACACCAGTGTGAGACAGTCCACATCCAAGAGCCTGTCCTTTGGCCTACCATTAACCCTGACGAGTCCAGAACCAGCTGTGGTTAGACCACGTACCCAGCGTTCTCTGTCTGGCACATACGTGGCCCGCCCTCCAACATGGAATCTTTCTGAGGAATTGGGGGCTACATCAGCATCATGCCTTCTCCCTCATGCTGGTGCTGTAATCATTTCACAAGAAGAAGAGGATTCTCTTCAAGAAATGAGTACAAGTTTTGGAGAATGGCGATTAGACGACCCAAAGGATGACCCTAAGGACGACAGCTACAAGCCACCAAGTGACACCTCCCCATCAGACTCAGGCTCGGCCTCTACATCCAGCCATGGCTCAATAAATGGATGGTCAGAGAGAAAGTGGATAGTCGAATCGGAGCATAATGCAAATGTTTCAAACTTGCTGCCTTTGTGGAATGCCCGTGGCAGAGAGGAAATCAACCAAACACGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320632 lncRNA upstream 15529 20677188 ~ 20677431 (+) True G236334
XR_005638522.1 lncRNA upstream 30175 20661377 ~ 20662785 (+) True LOC120554584
TU320617 lncRNA upstream 57115 20633878 ~ 20635845 (+) False LOC120554627
TU320605 lncRNA upstream 134361 20558255 ~ 20558599 (+) True G236313
TU320604 lncRNA upstream 134865 20557892 ~ 20558095 (+) True G236312
XR_005638268.1 lncRNA downstream 1313 20695924 ~ 20696532 (+) True LOC120554017
TU320649 lncRNA downstream 58005 20752616 ~ 20753017 (+) True G236346
TU320666 lncRNA downstream 74865 20769476 ~ 20841778 (+) False fmnl2b
TU320673 lncRNA downstream 92338 20786949 ~ 20837810 (+) True G236355
TU320686 lncRNA downstream 98855 20793466 ~ 20795400 (+) True G236361
XM_039793639.1 mRNA upstream 57038 20595095 ~ 20635922 (+) True LOC120554627
XM_039793731.1 mRNA upstream 183046 20487667 ~ 20509914 (+) True LOC120554724
XM_039793628.1 mRNA upstream 212634 20459974 ~ 20480326 (+) True LOC120554612
XM_039793629.1 mRNA upstream 212634 20459986 ~ 20480326 (+) False LOC120554612
XM_039792555.1 mRNA upstream 273842 20409012 ~ 20419118 (+) True gyg2
XM_039792557.1 mRNA downstream 11781 20706392 ~ 20707535 (+) True LOC120554009
XM_039793231.1 mRNA downstream 107656 20802267 ~ 20832663 (+) True fmnl2b
XM_039793203.1 mRNA downstream 181820 20876431 ~ 20886020 (+) True cavin2b
XM_039793634.1 mRNA downstream 193358 20887969 ~ 20889752 (+) True ebpl
XM_039793685.1 mRNA downstream 257541 20952152 ~ 20956272 (+) True eef1b2
XR_005638570.1 other upstream 183015 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 295641 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 459165 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 695293 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2511148 18176825 ~ 18181812 (+) True G235778
TU320664 other downstream 121125 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 218044 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 607715 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 713316 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 713316 21407927 ~ 21422915 (+) True G236461

Expression Profile