RNA id: XM_039792564.1


Basic Information

Item Value
RNA id XM_039792564.1
length 5491
RNA type mRNA
GC content 0.55
exon number 18
gene id LOC120554016
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21651966 ~ 21691088 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cCGGGACGTCCTGAGCCAGCTTCCTGTTTGATGCGTGGACGGTGGTGGCGGCGAGGGGAACAGCTGATGTGCTGAGGAACGCcggagtcagaagaagaagagtccgGCTGGACGGACGCTCAGATCTTTGGGAGAAATGGCGGGAAAGTTTGGGAGGTTGGTGCTGTGGACGCTCGccgtgctgctgctgtcagGATACATCTACATAGAGAcagATGCGACTCCTGACCGGACGGACTCGGAGCAACGTGGTGGATATTTGGGCGCTCCAGCGGACTCGGATCAGCTTCTATACAGACGACACGCCGCTGTAACTCGGAGAAAAAGGAATATCTTGTTTCCCAGCGGAGTCAAACTTTGCTCTCAGGAGACATTCGACCAGGCCGTCGCCAACCACCTCAACTACTTTCACCTCAGAGtgtgtCAGGAGACCGTTTGGGAAGCCTTTAAGATCTTCTGGGACCGTCTGCCGGAGCGGGACGAGTTCCACACCTGGGTCAGCCGCTGCATGGACGGCTCGGTCAGCGTCATTGAAATCGGAAAAAaattcagccaatcagaggagcACATTAGCCTCATCCGCAGCAGAGTCGCCATGGCAGCTTCAGTCAACAGTGTTCCTGTTACCTCAGACCCTCCACCATGCAGCTCTGACTCGATGCCCGTCCAGACGGCAGAAGAGGTGACTCGGCCAGAGGAAGATGCAATCCCGACCGATCAAAATGATCTTCCAGCGGGCTTTGACGTCACTGCTTGGACGCCTCTGCTCTTGGCAACCGAAGGGTCTGTTCAAACAACATCTTTGGCTGAGATTCGTGGGAATTTGACTTCTGAGCCTGCGGATGTTTCCGTGCCAGAAGACACCAAAGACATCCAGAAATCTGGGGGCGGAGTAACTTCCGAAACACCTCTGGTCATCACTGAAACTCTACAGTCTGAAGGAGACGATGTTGAAGACTTTTTAGAGGATATAGTGGAGGTTTCCACAAAGGTTTCGGACTCTTTTACCCACAAACCCTTTGTTGTGATCGTTGAAGAAGTTGGGGAAGAGAAAACTGCCCCAGAAGAGGCTGTAGGGGAAGATGAAATCATTCTGGATCTGGATGTACCTGACTCTGAAGTGGTTAAAGAAGTTACCCCACAAGGTGAGGAGCCACCCTCGGAAATCATGGCCGAAGAATTCCTCACAGAAGCTACTATTGTGGCTCCTACAGACCCTCCGTCAGAACCAGCTACAGAAGCTGCCACACTGGGAGAATTGGGGCAGGAATTATCCCCAGAGCCAGTCGTAACGGAGCATACCCCAGAGACAAGTGTCAAGGTTGTTGAGGGTGCAGAACTTGAAGAAATTCCGGACGAATCTTTAGATATCACCCCAGAAGTAGCCTTGACTTTTGAGGAACACACAACAGATGATCCAGAATTAGTTGAGGCAGAAATTCTCGAAGAACCCGAGGCCGTTGTAGTAGAAAGCCAAGATGAAACCGAAGTCAGCACGGATGCAACTCCAACTGTATTTCTGATTACAgattcagaagaagaagaagaaatatttaTAAATGTGACTCCAGAACAAGAATCTGTCTCTGACATGACAACAGAGGCTCCTTCGCAGGCCTCAGACGAGATAGCATCAGATGTTAGTGAAGACGTTGGGGCAGAAGACAAACCAACACTAATGTCTGAGGTTACTTCTGAGCCTGTCGTCGTTATCTTACAAGACTACGGGGATGGAGACACTGAGGAAATGTCACCAGATGTAGAAGATGATACGACCGAAATGGAGTCCACTGAGGTGATAACAACAAAGACCGATGTAATTGAGGCTGAAGAAGACTTAGCAGTTGAAACAGAAGATGTCACAGTGGCAGAAGACGAAAAACTACCCCAGGAAACAGAGGAGGCAACCGTTACTCAAGAGGATACAACAGAAGAACCAGATGAAGCTACGATAGAAGAAGGGCCAGTGAAGACAGTTGATGACACTACAAAAGGAGGAACGGTTGAGGCTACAGGAGAACCAGCTGAAGGTCCAGAAGTGCCGGAGGAACCTTCAGAACCTGTAGAGAAAGAAGGAGCAGACACAACGGAAACTGCACAAGAACCAGAACTTGTAGAAGAAACTGTAGAAGTAGTAGACCCTACAGGAGGGGCTGCGCAACAAGAAGGACCTGCAGAAGAAAGTCCTGAAGAGACAGGACTCATAGGAGAGCCAACGCAAGAACCAGAACTTATAGAAGAAACTCCTGAAGAGACAGAACTCATAGAAGAGCCAACGCAAGAAGCTGAACTTGTCGAAGAAACTCCTGAAGAGACAGAACCGTCCAAAGAACCAGCACACAAACTTGTAGAAGCTGCAGAAGAGACTGAAGATGAGGGTTTCTCCCCAGATGTTACAAAGCCAGACGATCCAGAGGAAATCGTAACGGTCACGTCTGAGTCCGTGGCCGAAATCACCCCAGAAACGGTGGTCGAAGTCGCCGCAGAGACCACGCAACACGCGGCCGCGGACGCCACGACCAAGTACGTGTTGGAGTACAACAACGGAAACTTCCCCGATCTAACGAAGACGCCTTTTGAAGCCGATGACAACCTGCTGGGAAACAACGACTTTGGCTTGGACGACCAGAACTCGCTGAGAATCAAACTCAGATCAGAAACTTACAACGACGCTCTGAGAGACCCGAGCAGCGTCCAGTACCAACATCTGGCCCGGCAGTTCACACGCAGgATCCAGGAGGCCTTCGAGAGGCTGCCGGGCTTCAAGAGCACCTCGGTCCTGGAGTTCAGGCCTCAGAAGGACCTCGAGCGAGGTCTGGTGGTCCTGGTCCACTACACCATCACGCTGGAGGTCTCTGGCGGCCTCCCCAACGCCACGCTGGACCTGATCTCTCTGCAGAACCAGCTGGTGGAGAAGAACTACCCCGGCGCCCCAGAGACCCCCACGGTGGTCTACACCATCACCCACTTCGGGAACTACATCACCGAGGCCCTGCACCGGGACGACCTGCTGCTAGGCAACGGCAGCCTGGAGACACTGGCACCACCGGAGaaagCGGAGAACGTGCTGCCTGATGTGAAACCTACGAGCCGCCCGGCCGACTCCTCCAACAGCATGGATAACGTGCTGGCAGCGGAGAAGCCTCCGGACGCTCCGAGCCACGAGGCCGACGCCGCCAACGTCTTCCTCAACAAGGACGACTTCCTGTTGGACCCTCTCGACCAATGGGAAGGCCCGCAGGTCGCGGCGCGGAGCGAGAACGACGTCTTCCTGTTCGACGAGAACACCGGTCGTCTGCCAGCCGCCGAGATCCCCGAGAAGACCtccggcacacacacacaccGTGCTGGGAGTGTTGAAGACGAGGGATTCCTGCTCAGTAACGCTGCAGCCCACGGAGACGATGGCGCCGCCAGGCAGGGCGCCACGGCCCCCCCCGCGGGCGCCGCAGGGGACGAAGGATCCGGTTCTGGTTTCTCTGGAGACGGACAGGAAACGGACGCCTGGTCACGGCCAGCTGGGGGGACCTCAGACGGGACTCTCAGTCTCGAGCCCTATGTGGAGGCGCTGCCACCTCCCGATTTGGAGGAAACGGAGGACGAAGATTCGGACTCGGATGCCGCCGGCGTCGGGCCGAACGATGATGTCATCGCGCCAGAAGTTGAGTCCTCGACGCTTCCAGCTTCTTCCGAAGACTCGGCGCTGCACGGCGGCGTTGAAGAGCCGTTCTCGGACCAGGTTCTGGTCACGCCGCACGTCACGAACCCTCGGCGCTCAACCACGACCGAGGCGCCTGTTTTCTCCCCGAGAGGAACGCTCACCGTGGAGCTCTCTCTGGAGACGGACGAGGCTTCTGGCGTCTACGACGACTACTCTTTAAACGAACAACGTACGCAAGCCGAAGAGCTCTCAGAAACTACTGAAGAAGTATCTGAAGGACTCCCAGTATCTGAAGGACTCCCAGTATCTGAAGGACTCCCAGTATCTGAAGAACTCCCAGTATCTGAAGGACTCCCAGTATCTGAAGGACTCCCAGTATCTGAAGAACTCCCAGTATCTGAAGGACTCCCAGTATCTGAAGGACTCCCAGTATCTGAAGGACTCCCAGTATCTGAAGAACTCCCAGTATCTGAAGGACTCCCAGTATCTGAAGAGATCCAAGAGCTCCCAGTAGCAGAAGAGCTCCCAGTAACTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCAGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCAGAAGAGCTCCCAGTAGCTGAAGAGCTCCCGTGCAGCAGAAGAGCTCCCACTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCAGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCAGAAGAGCTCCCAGTAGCAGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCAGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCAGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGGTCCCAGTAGCTGAAGAGCTCCCAGTAGCTGAAGAGCTCCCAGTAACTGAAGAGCTCCCAGTAACACCAGTTGGGTTTGAGTCAGAAGAAGAGGTACCAGACCAGGACAAGGTCCCAGTCCTCGTTGGTCCTGAAGTCCCTGAACACGACATTTCGTCACCGGACGCAGTCGAGGTTCTAGACGAGCGGCCAATCGGCGCGCTGACGACCGTCGCCATCGACGACGAAGACAAAGACCTGGCTCTCGATGAGGTCATGGTTGTTACCGCGACGACTACTGCTCCATCCTCCATCATCGCGCTCTCTCCGGAGAAGGACTCGCCATTCACTCGCGTGTCAGACTCGGCGCCAGAGGACGAGGAAGCGGCGCCGCCGAACCACGAGGACCAATCAGAAGAGGTTCCACCGAGCGACCTGACTCCTGGCGTTCTTCGGTACACGCCGGAACCGTTTGGCGTGACCCAAATGTCTCCAGTCGCTACGGCGCCACACGAAATCACCTCAGGAAGCGAATCAGGCGGCGAAAGCCTCCGTGCGACGAGTTCCTCGCCGCAGGAAGCCCCCGGTGTGCCGAGCGTGTTCCCGTACGCCAGCGGCGCCGATGGGGACGGCAGCGGTTTCTCCAGCGGCGCCAGGGGCTCGGCGCCGGACGCCGTGGCGTTGCCGACGCGGCCAGGCCGGGCCCTGACCGTGTTCTTCAGCCTCCGGGTCACCAACATGGCGTTCTCCCCAGACCTGTTCAACAAGAGCTCGCCAGAATACAAAGCCCTGGAGCAGCGCTTCACTCAGCTGcttcCTAGGACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321061 lncRNA downstream 711 21573765 ~ 21651255 (-) True G236627
TU321233 lncRNA downstream 6358 21644465 ~ 21645608 (-) True G236750
TU321229 lncRNA downstream 11234 21638277 ~ 21640732 (-) True G236747
TU321002 lncRNA downstream 12090 21636233 ~ 21639876 (-) True G236574
TU321027 lncRNA downstream 18854 21631418 ~ 21633112 (-) True G236593
TU321013 lncRNA upstream 34355 21725443 ~ 21728461 (-) True G236580
TU321008 lncRNA upstream 75388 21766476 ~ 21809098 (-) True G236578
XR_005638558.1 lncRNA upstream 103742 21794830 ~ 21798662 (-) True LOC120554678
TU321039 lncRNA upstream 107666 21798754 ~ 21806413 (-) True G236605
XR_005638553.1 lncRNA upstream 131197 21822285 ~ 21823393 (-) True LOC120554672
XM_039792563.1 mRNA downstream 48 21641838 ~ 21651918 (-) False LOC120554015
XM_039792562.1 mRNA downstream 94945 21300281 ~ 21557021 (-) True LOC120554014
XM_039792561.1 mRNA downstream 409789 21201874 ~ 21242177 (-) True LOC120554013
XM_039793658.1 mRNA downstream 502603 21126894 ~ 21149363 (-) True LOC120554641
XM_039793659.1 mRNA downstream 506811 21126894 ~ 21145155 (-) False LOC120554641
XM_039793671.1 mRNA upstream 9617 21700705 ~ 21725016 (-) True LOC120554648
XM_039793672.1 mRNA upstream 9618 21700706 ~ 21725016 (-) False LOC120554648
XM_039793670.1 mRNA upstream 9833 21700921 ~ 21725016 (-) False LOC120554648
TU321228 other downstream 89 21634848 ~ 21651877 (-) True LOC120554015
TU321003 other downstream 94985 21538502 ~ 21556981 (-) False LOC120554014
TU321138 other downstream 445156 21201915 ~ 21206810 (-) False LOC120554013
TU320995 other downstream 700286 20941019 ~ 20951680 (-) False arl11
TU321090 other downstream 788655 20862680 ~ 20863311 (-) True G236646

Expression Profile