RNA id: XM_039792594.1


Basic Information

Item Value
RNA id XM_039792594.1
length 4865
RNA type mRNA
GC content 0.41
exon number 7
gene id chrm4a
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14878558 ~ 14924344 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAAAGCTGAGCGGCCAGATTTTGATTTTCGGGAGAATCACTGAGTAATTTAGAAGTATAAGTGATTAGTTGGTGTTGATTTGTTATGTGTTATTAGTTTAGATCTCTATGACAACCCGGCTGATTGATACAGCATCTAACCCCAGAGAGGAAAACTGCCATATCCAAATTGGTTGATATCATACCAGAAAGACAAACCATAACAGAAGCAAAGGATACACAACACAGTGTAAACTAGTTATCCGGCGTAGGGCGGtagagtaggagaggaggataAAATTAAGAAATAAAAGGATATTGATTTAAAGAAGGACTACGGAAGGAATTTCGGTGCGACAGCCGGTTGAAAACTTGAAGAGAGGAAAGTGGAGAAGACAGAAAGCGGAGAAATAAGGGAGAGAGGTCTCAGGTTGGCAGCTGTCGGTACTCCGCCATGCAACATGAGTGACGGCAGTAACGGAGTTGGGGGGCTTCCACCCCTCTGGAACTTCAATGGGTCatcgatcgtccaatcagctgacCTGTTCTCCAACACCTCCTGCAATACGTCCTCCAATGATTCAACATTCTGCTCTCCTGTGGACGAAGGAGTTGGGGCAGGAAGTCCATATAAAGCTCTGGAGATGTTTTTTATTGCCTTGGTTACAGGATCTCTGAGTTTTGTGACTGTCACAGGAAATATTTTAGTCATGCTGTCCATCAAAGTAAACCGCCACCTACAAACTGTCAATAACTATTTCTTATTTTCATTAGCATGCGCTGACTTGATAATCGGTGCTTTCAGCATGAATCTGTACACAGTCTACATTATCGTTGGCTACTGGCCGCTTGGGCCGGTGGTGTGTGACTTGTGGCTAGCTTTAGATTATGTTGTCTCAAATGCTTCAGTGATGAATTTATTGATCATCAGCTTTGATCGCTATTTCTGCGTGACAAAACCCCTCACATATCCGACAAGGAGGACAACGAAGATGGCAGGGTTAATGATCGCGGCAGCATGGATCCTGTCGTTCATCTTGTGGGCTCCCGCCATCTTGTTCTGGCAGTTCATCGTTGGACAGCGAACAGTGCCACCTGGAGAGTGTTATATTCAGTTCCTTTCAAACCCTGCAGCAACATTTGGGACGGCTATAGCAGCATTCTATCTTCCTGTCATTATTATGACAGTCCTGTACATCCACATTTCCCTTGCCTCCAGGAGCAGGGTGTCCAAACACAAAccagagaagaaggagaagaagggaATTAAAACTCCCAGCTTGATGAAGAGTCACCTGTTAAAGCAGAACAACAACAATGAGACCAGTCCTCAGGCCAGTCCCCGCTCTACGCCCAAAGTCAGTCTAGACTCAACTACCACTGCACTGGAGGCTGTGAAAAACGGCAGAGTGGAGGAACCAAAACCTGTTCAGCCACAGCCTCTAGCACAGCCCAGTCCAGGACTCACACAGgaAAAAGAGAGCTCCAACGATTCGTCCACAGCTTTTATTCCCCACACAGAACCAAAGGACAACACCAACAACGAGGTGATATCTGAGGCTGCAACAAATCCCAACCCAGAGGCCACATCAACAGCCAATCCTGCAGTATCCAAGATCACCTCCAACTCAAGGTGGTCCAAGATAAAGATTGTAACGAAGCAGGCCGGGGATGAATGCATCACCGCTTTAGAGATTGTCCCCCCCGTAGAGGGAGCCGAGAGGCATTCAATCCCAATCAGCCGTCCTAGGACTGTGGCAAGAAAGTTTGCAAGCATTGCTAGAAGCCAAGTGAAAAGGAAAAGACAGATGGCTGCCAGAGAAAAGAAAGTGACCAAGACTATCTTTGCCATCCTGCTGGCTTTCATCATCACATGGACACCGTATAACGTCATGGTGTTGATCTCAACCTTCTGCCAGTCTTGTGTCCCTGACACTGTGTGGGCTATTGGCTACTGGCTGTGTTATGTCAACTCTACTATCAACCCAGCTTGTTACGCACTGTGCAACGCCACATTCAAAAAGACGTTCAAGAACCTGCTGCTGTGCCAGTATAAAAATATAGGTACAAGATGAGATGGAAGGAGAAGACTTAGGGTGGGATGGATGGGGAAGGGGTAAACAAAACAAGAAGGAGGGACAGTAGAAGGGAGAAAGGAAATATTGTTTATAAGGTGAGTAGAAGAGCCctaaagggagagaggaaataTTGTTGAAAGGTGAGTGGAAGAGGGCTGAAGGGAAATGGATGACACAACTTAGTTGAAGGGTTCCTTCTTAAGACTAGATACATATATAGGGGATGAGCAACTGTGGTTTATTCTGCAAATGAATGCCAGTCATCCCTATTGGTACACATAGATTCAGATCGAAATGTGACAGTGATTCTTTAACCTGCCCAGTTTAATGATATGACAGTTGTGTTTCCAATATACACTACAGGAGTTCAGGAATAGTTTCACCACCCATTAAAAATTATGTGTCACTGCCTTGTTAATTATAGCAGCAACTCAAGCCATGGCTGCTGTCATTATCACAGCTACATTCTGTCACAATCACAGCAAAGGCAGCAGCCAGTCAAAATGCAATATAGCTATGTTAACAAAAATAGTAACTAGCAAAGACTAGTTATCTAAAATTAGCTGTAATGATATAGACTTGCAGCTGAGCCATAGCTGAAAGTGTGCATACTCTCACTcaattataaataaaacataatacataatagTATTCCATATCATAATGTATCCATGCTGTATGCACGTTAGAACTCAGCCTTCCTCTGTGGATCAGAGGGAATGCATAAGGTATTGCAAGGTACAGTAGCTCAAAACCTATTGCAAAGGAACGCAAAAGTAGgtaagaaaaaacaaaattttcCCTGTGAGCTTTTGGTGGTCATTTTCATTTAAGTGTAGGGCAGCTTCTTGGAAAGAAATCTTATCGTGGTGATCTTTTATGAATTTTATCTGATTTCATTATTGTatataaatgtttaaaactCAGATTCTGATTGACAGCCCAAATTATGCAATTGCTTCTGATACCATAGATCATAGATGccataaaactgaaaaaaatgaaattaaagtaTGAATAAATGAGATCTACAtatagaggagaggagggatgaCCGGGAGACTTTGACTGTGACTGAGGACAAAGCAAAAGTGGAGGAGTAGGGTAAGTTGTTATGGTGGAGGATAGAGGAGAAGGTAGCAGCAGTATGAGGGAAAATACAAGTAGCATACCACACTGTGGCAGCCATGTTGTGAAGGTCTTTAACTTATGACTCATACTTATAACAATAGCAGCTAATTATGTTTCTAAAGAAACTTTAATTATTTACAACTTGACCACCTCATTAACTGTAGTACTTCTCCCTATTTAAGATGTAGTAGTGATTTTCTCCTATTACCCATGTGATCAGTTTGTGTTTTGGTCATTCCATTTCATACGCCATCAAATAACAATCTGGTTTGACAAATGTCAAGATCTTGCTCTCAATAAATTTGATTTGCATACTACTTGCATGTCATAGAACCACAGAAGTTACAAATAGTAGAAGAGCTTACTATACAAATAGGCTACTTTACATAGTCACCTGCAGTTTGTTAGCCAATAGTTGTCTGCTTCCGTGTTAATTAGCATATTCAAACATGATTAAAGGTATAGCCCCATTAGCAGTCCTTAGAAGTTGCAATGTTCAACCCCCAATCTGAAAGTTTTGAACTGCTGAGATAAGTGGAACTAAAATTGTCGTAAAAAATTCTGTTCTGTGGTACCCACCTTCATGAAGATTATCATCTTCTGATGTATGTACTTCGAGATATTTAATGAACTTTACAAATGCACTGTAATGCTTAAATCCAATATCAATTCTCCACACTGTTCCAGGAGTCCATAGCAGCCAGGTGGGGTGAGGTAGGGGTCGCTTGGTAGGGAATGCTTGGAGTTGGcttaaatataatatatggtTTATGTAATTGTAATAATATAAAGAgtaatttttaaatgtgtgatgATCAGGAAGTTTTCTTCTTAGACCTAAATTTCACACTACTGCCCTTAGGCCTCGAACACTGTTGCTTGAGGCTTAAGCCCATCAGAAAGGAGCTGTAtagatttttatatatttcttttgtcCAAATGAAATGTTTGCCCACATGGTAGCATTAAATTAAAGTGCAAGAGTTCTACATAAGTAGGGCTTTTCCTCTGATGATTTTGTctttaaatgtcaaaatgaatggagagAAATTtgtttataatattataatagtaGTATGTACAGATTTGGCATTATGGCCAGAGGAATTAGTCACCACGAAGCATCTAAAACACAGAGCTTTCATCAGCTGAGGACTATGGACGTCACTTCATTTTGTGGCAATCTGCCAGTTAGACTTTGATATTTGATTTACAAAGTTTCATGATAATCTGGCCAGTAGTTGTAAGTCTACAAACTAACTgcacaataaagataaaaacaaaagcacACAAATAACTAAGCGACCCTGTGATTTGGACCTGAAAATTGGACCAGTAGTTTTTCTGTAATTGTGCTGACAGACAAACGAACCAAACctaaaacataacctcctttgCGAAGGTGATAATGTTACCGCAGTTACCTCAACTTATTAATGCTTAAACATTTCCTTATAGCAGCGGTGGTTATGTCAAGTGACTAATACGCCTGTTTGGAAATTAATATCTATGCTGCAGTGTTAATTTCgttaacaataataatgaaatatgtTCCCCAATGACCCTTTTCCCATGACGAGCTGTGATATAGCTGTGAAAATAATAttagtgatgtccaaatgaagcttcatgaagctttgtgaacagctttctttattttctctgagGCCACTAGA

Function

GO: NA

KEGG:

id description
K04132 CHRM4; muscarinic acetylcholine receptor M4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318887 lncRNA downstream 50149 14806632 ~ 14828409 (-) True G234896
TU318813 lncRNA downstream 278272 14599180 ~ 14600286 (-) True G234828
TU318814 lncRNA downstream 278536 14599136 ~ 14600022 (-) False G234828
TU318784 lncRNA downstream 336238 14537841 ~ 14542320 (-) True G234802
TU318761 lncRNA downstream 394529 14477426 ~ 14484029 (-) True LOC120554079
TU318929 lncRNA upstream 162606 15086950 ~ 15087401 (-) True G234927
XR_005638353.1 lncRNA upstream 265414 15189758 ~ 15190653 (-) True LOC120554280
XR_005638341.1 lncRNA upstream 384164 15308508 ~ 15309289 (-) True LOC120554270
TU319059 lncRNA upstream 442064 15366408 ~ 15366892 (-) True G235029
TU319060 lncRNA upstream 443913 15368257 ~ 15369022 (-) True LOC120554282
XM_039793536.1 mRNA downstream 263659 14601155 ~ 14614899 (-) False LOC120554575
XM_039793534.1 mRNA downstream 263659 14601155 ~ 14614899 (-) False LOC120554575
XM_039793535.1 mRNA downstream 263659 14601155 ~ 14614899 (-) False LOC120554575
XM_039793533.1 mRNA downstream 263659 14601155 ~ 14614899 (-) True LOC120554575
XM_039793117.1 mRNA downstream 308648 14545740 ~ 14569910 (-) True LOC120554302
XM_039793249.1 mRNA upstream 11376 14935720 ~ 14963971 (-) False gucy1b2
XM_039793248.1 mRNA upstream 11376 14935720 ~ 14963971 (-) True gucy1b2
XM_039793250.1 mRNA upstream 11376 14935720 ~ 14960460 (-) False gucy1b2
XM_039793252.1 mRNA upstream 11376 14935720 ~ 14960077 (-) False gucy1b2
XM_039793251.1 mRNA upstream 11376 14935720 ~ 14957246 (-) False gucy1b2
TU318891 other downstream 28821 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1568 other downstream 1766330 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 1821871 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1566 other downstream 1892670 12985817 ~ 12985888 (-) True trnae-uuc_66
TU318311 other downstream 1924433 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1569 other upstream 38017 14962361 ~ 14962433 (-) True trnar-ccg_4
XR_005638386.1 other upstream 45178 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1570 other upstream 861977 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 863983 15788327 ~ 15788399 (-) True trnak-cuu_17
unassigned_transcript_1572 other upstream 865304 15789648 ~ 15789719 (-) True trnav-cac_14

Expression Profile