RNA id: XM_039792657.1


Basic Information

Item Value
RNA id XM_039792657.1
length 7529
RNA type mRNA
GC content 0.51
exon number 25
gene id obsl1a
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12368396 ~ 12383014 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caactctctctctcactctttagCTGTTGGACAATGACGGTATCAGAGCTGACGCATAAACCGAGCACCCGGCTGACTTTCAGTCATTTTCCTCTCTGCCATCTGCAACCTAACGCCAAACTGAGGACACAACCAAGACATGATACCTGTGACTATTGGCCAACAAGTGTGAATGGACgattttatttttcttgctATGACTCTAAGTAACCAGGGGGTGGGTCAAATGTGAACCAGAATCCACAAACAACAAACCAGATAGCCAAGGAACAAGAGCTGAGGAGTCTCACAAAGCTTTATGACGAATATCTGCCATTTCTACCAATCAAAGAATAATTTGAAGAAGGGACCAAAGCTCATACGAATTAACTGACGCCAGCGTGAACATTTTGAGGACACTATTTTTGAGTAATCCTCACGTCAGTGACAGAATGCTTTAATGACAGCGATTCATTTAGCGCTCCTTCACCAAAGATAAGAGGCTCTAATTGAGGTGATTCCTTCATTCAAACCACAGAGAGGGTGACTTCATCATGGatatttttggaggtgcacCTCGTATTTTGGGCTACCCACGCCCTGTGGTGGCACTGTGTGGCGCAGACGCCACACTACGGTGCCAAATTGGTGGGGATCCTCGTCCTGATGTGATCTGGGAGCGTAAAAACATCCAGATCTTGTCTGATGGACACTACAAGCTTTCTGAGGAGGGAAAAGCCTACCTGCTGACAATTACTGGAGTGACTCTGCAGGATGCTGGCCAGTATATTTGCAAGGCCAAAAATAGCATAGGTGAAACCTATGCAGCAGCCTCCCTCAAAGTGGAAGGGGAGGCCCAGCCACAGGAAGGTGGGCAACGGCAATTAGGGGTCAACGGTATGCAGCAACCAATGAAAGAAAATGGAGAATTTGAAGGACACCAGAATGGGTACTGCATAGTGAAAAATGGTGAACACAGCAAAGAAAATGGAGAGGAGCTGAATGGAGAGCACAAGCAGAAGCTTAGTGAAAAACAAGAGGAGGTTGATTTAACGTCTGATGAGAAACCGCGATTTCTCATCAAGCCCCTCTCTTTGCGCGTGGATCGGGGAGAAGACGCCGCCTTCTCCTGCAAAATCTGGGGCACTCCTCTGCCCGAGGTAACGTGGGAGAAAGACGGGAAGAAGCTGAACGATATATTCGAGAGTGCACACTTCAGCGTGAGCAATCAAGATGGCGGCTGGTTCCAGCTCAAGCTCTATAGGACCCGCATGCCAGACAAAGGTGTCTACACCTGCAGGGCTATCAACTGCTATGGTGAGGCCTTGGCCGGGGCCGTCCTTCTTGTCGAGCCTGTACCGGAACGGGAGGAGAGTAAAATGTCCTCAAATAGTCGTACTAACAGCGAGTGGTCGCCAAAGCACAGGGGCGGGAGGCTAAGTTTGTCGAGGGTCATAGAGGAGCCACCTGTCCGTGCTTCTAAAGCCAAGAAGTTTGCAGTGGCAGAGGGGAAACACGCCAAGTTCCGTTGCTTTGTGACAGGGAAGCCCAAGCCAGAGATCATTTGGAAGAAAGATGGGGTTCCTCTAGAACCCGGGAGGCGTCATCTGATATTTGAGGACAGAGAAGGTTACTACACACTGAAGGttctgtactgtaaagtgcaaGACACaggactgtatgtgtgtgcagcaTCAAACGCTCTTGGAAACACCCTCAGCGCTGTTCACCTGTCTGTCAAAGGCCCAGCTGTGCGGTTCAGGCGTCCATTAAGAGACGTAGAGGTGAGGGAGAGGGACGTCGCCGTGCTGGAGTGTGAGGTACCCGATGAGTCACTCCCATCTGCCTGGTACCTGGAGGACCACCGGCTGATGCCCAGCAGTAAATATGGGATGGAGCAGAAAGGAGCCACAAGAAGACTGACCATCCATGATGTTGGGACCGACGATGATGGAGTGTATCTCTGCGAGATGCCAGATGGAGCAAAGAGCATTGCAGAGCTATCAGTTAAAGGTACTATTGTTCGTAAACTTCCTCGGAAGCTGGAGGTCCTGGAGGGTGAGAACGCTGCGTTCTGCGTGGAGGTGGAGAGCGACGACATGGAGATCAGCTGGTACAAAGACGGTTTGAAGCTACATGAGACTCACCAGACGATCCTGAAGTCTTTTGGCAAAACTCACATTCTGGTCATTGTCAACGTGGCCTATCAAGACTCAGGGGTAGTGACCTTTGTTGCCGGAAGATCCAAGACCTCTTCACGTCTCAAAGTCAAAGCCACACGACATAGCCCTCCTATCTGCCCTGTGGGAGTGAAAATGGATGTGGATCGACCCAACAGTGCTCTGCTCACCTGGGATCCTGCCCCCAACAGCCCGACCTCCACCCGATCCATCTTTGTCTTGGAGAGACAGGAAGTGGGCTCCCAAGAGTGGCAGAAGTGTTTCACTTCAGAGACCGCCACTTCAGCTGAGATCGGAGGCGACAGTGTGCCGTGTGATGGCGACTACCGGTTCCGGGTCTGTTGCATCAACAAGTATGGGCGAAGCGGCCATGTGGAGTTTCCCAAAGCTGTCCATCTGGccccccccccccccccccccccccaaaacaaaaaccccccccccccccccccccccccttttttttttaccctttccATCGAATTGTCTGCCCCAATGGTTGGAACCTGGTTTCTGAATAGTGCTCAACTGCAGCACGGTGGACGATATTCAATACAACAGTCCCAAACACAGCACTCATTGGTTATTTGTCAAACTTGCACTACAGAAGACACAGCAGAGGTCACGTTCATAGCCAATGGAGTCCGAGATTCAGCTGTACTCAAGGTTAAACctGCTATGGTAAAATTCAATGCTCTGTCAGACTTAGACAGCCATAAGAGGGTGGACATTGGTGACCCCATTGTACTCTACTGTGAAGTCTCCCACCCCTTCGCAAAAGTATCCTGGTTCAAAGATGGCGAGGAGCTCCAGGCGACCGATGGCCTCAACATCCAATCAGATGGCAACATGAGGAGGATTGTGATTCAATCGGCTGATGAATCTCACTCTGGAGTTTATACATGTGAAACTTCAGGAGATGTCATCAAATTCAACGTGGACGTGTCAGGTCCTTCTGTGGAGTTCAGTCCGGTTCCAGAGGAGGAGCTCCATAAGAGCAGCATGGAGCTGGACCCCGTGGTGCTGCTATGCCACGTCTCCACCGACGATGCCAAAGTTGTGTGGTATAAGGATGGCTGTGAGATCCAGCCCACTGACAACATCACTCTGCAGGCAGAGGGAACCATGAGGAGGCTGATCATACGCTCTGCAGAAACCTCCGATGCTGGCAGCTACACCTGCCAGGCCGGAAACAACAGCGTGGAGTTCACTGTCAATGTTAGAGAGCCTCCAGTGATGATTGTGGAACCTAAGGATGATGTTGTGATGGAGAGCTTTATCTCAGAGGAGATCCACCTGCAGTGCGAGTTGTCTCGTTCCAGTGGGAGGGTGCGGTGGTTCAAAGACGGCCAGGAGGTGGAGGAAAGCGACACCGTCCAGCTCATATGCGAGGGCCCTTACAGGAGGCTGACTATACTCAACGGGTCAGTGGAGGATGGCGGAGAGTATGTCTGTGAAACAGATGGAGACTCTGTCTTTTTCCAGCTTAGTGTCAAGGAGCCACTGGTAAGAATCATTTCTCCCAGTGAATCAGAGTTGGAACTGACCCATTTGGCCTCCGAGAGGCTGGAGCTCAGCTGTGAAATCTCCCAGGCTGATGCCCCTGTCCGGTGGTACAAAGACAGCCTGGAGGTAGAGGAGAGTCCTAACTTGATCTTGGAGGTAGATGGGGCCCAACGCCGGCTGGTTGTACCCATAACCACTGTGGATGACACAGGGGAGTATGTATGTGACACTGAAGATGACTCTGTGGCCTTCCTGGTCACTATTGCAGAGCCACCAGTGACGCTTACTCGTCCCAAAAACACCCCCGACAAACTGGAGAGTTTTGCCGGCAAACCAATCCTGCTGGAGATTGAGATGTCCCGGCCAAGTGCTGAAGTCAAGTGGTGGCTAAATGGCAGAGAAGTAGAGGAGAGTAGTAACATCACAATCACAGAGGATGGGCTCATCCGCCGTCTGACCATCCACTCTCCCACCCCAGAGGATTCTGGGAGATACACCTGTGACGCTGTTGATGATAGAATTGATTTCCAGGTCAAAGTTTCAGAGCCTCCAGTGAAGATCCTAAGAAAGACAGAGATTAAGACAAACGTTAAATCCCTGATTTCTGATGAGATTGTGCTGGAGTGTGAGCTCTCCAGAGCCAACGGCGTCACAAAATGGTACAAGGATAACTGTCGTGTTGAGGGCGATGAAAGGTTCTGTGAGGAGGAAGAAGGTGCTTTCCGCTCATTGGTCATCCTCAACGCTGAACTCGGAGACTCAGGAGAGTACTTCCTGGATGCCGGAGATGATAATATCAGCTTCCAGGTTACAGTAGAAGAGCCGCCAGTGACAATTGTGGGCAACTCAAATGCCCTTGACTACCAGGAGATGGTGGCAGGGGAAGACCTGATCCTGGCCTGTGAATTGTCCCGTGCCAATGCCCCCGTCCAATGGTACTGTAATGACACGCTTCTTACCAGTGACTCCCGGACCTACATTGAGAGCTACGGCACTCTGAGGAaaattatcatttcaaatgtccAGCCCTCAGATTCTGGAAAGTATGTGTGTGACGCTGTGGACGATAAAATGATCAGCATTATCAGGATTCAAGAGCTTCCGGTTACGTTTGTGAACAAGGAGGATGACATTGTTGTGACAGGTTACGAGGGAGAGAGTGTGACATTGACGAGCTACGTGTCCAAGGAAAGCGCTTTAGTCCGTTGGATGAAAGACTGGACGCCTGTTGAAGGCGAACGTTCCCGAGCACTCATGGAGGGCCATAAGCGCACCCTTACTATCGAGCCATTGAGGCGCTCTGATGCTGGCGAATATACCTGCGATGTAGACACAGACCAGATCCACTTCAGCTTGCTGGTGAAAGAAATGAGAATCAAGTTTGTGAGGCCACTTCGAGACACTGTGGCCCATGCTGATGGTATGGTGACCCTTCGCTGTGAGGTGTGCAAGCCAAAAGCAGATGTCCAGTGGCTAAGGAATGGGGTGGAGGTGGTTCCAAGCAGGAGGTTCTCCATTCGGGCGGATGGAGTTGAACGAAGCTTGACCATCCACCGTTTAACCAGAGAAGATGCTGGAGAGTACGCTTGTGAGTCCAGAGATGACCGAACAGTGGCAATGCTGAGAGTAGAAATGCCTAGAGTGGTGGAGTTCCTCACAGAGCTCCACAACACCACTGTGCTTGAAGGAGAAGATGCCACCTTCAAATGTGTGGTTTCCCCTGAGGATGTCCAGTTGGTCTGGCTCATGGACAATGAGGCCATCACCCTGGGCGATCGATTCCAGGCAAACCAGAACGGTCTGTGCCACACCTTGGTTATCAAAAAGTGCCAGATGTTGGACTGTTCAAAGATTACAGCAGAGGCTGAGGGACAAATAAGCAAAGCCACCCTCAAAGTTCAGGAGGCTCAGGTCATGTTTACTAAGAAAATGGAGGCTGTCATGGCAGAAGAGTTTGGTGAGGCCACCTTGGAGACAGAGATCAGCCTTGAAATGGGAGAGGTCCAGTGGATGAGGCAAGGGGTGGTCATCCAGCCTGGTCCCCGACACACGCTGGCCCAGAATGGCTGTAAACGCAGTCTGACCATCCAAAACCTGACTCTGTCAGACCGGGGAACCTATCGCTGCGAGACTCTGCATGACCGTACGCAGGTCAAGCTCAATGTAGAGCCCCGTAAAATCTCCATCCGTAAAGGCCTAACTGACCAAGAAACCTTTGAACGAGAGACTGCCTCCTTCGAGGTAGAGCTCTCCCACACAGATGTGGAGGGAATTTGGCAGAAGGATGGCATCCGGGTGAAACCGAACAACCAGTGGCGGGTGAGCGCAAATGGGCTAATCCATGGCCTCACCCTGTCCAACCTCACCCTGGAAGACACAGGCACTATTGTCTTTTCAGCCGAAGGGGTGCGCACTACTGCCAGGCTCACTGTCAAAGAGACTCCAGTGTTTATCCTGAAAACGCTAGATGACGTCCGTGTGGAGGAGGAATTTCCAACCACTCTGGAGTGTGAATTCTCCAGACAAAACATCGAAGTCAAATGGCTTAAGAACGGGACGGAGCTGAAGCCGGGGAAGAACTGTCGGATCTACTCCATGGGCCGCAAGCGATTCTGTCAGATCATGCAGTGCTCCCCGGCTGACTCGGGCACCTACACATGTGACACAGGGGAAATCAACACTTCCTGTTCACTGGAGGTTTTCGAGCATAAGCTGGAAATAGTGCATGATATGGAGGACCTTTACATTCAGGAGGACCAGAATGCTGTCTTCATGTGTGAGGTTTCTCTGGAGAATGTTACTGGGGAGTGGCACAAAGACGGCCACAAGATCCGGCCCACTAGCACTATCAAGATCCGCACTGAAGGGACGAAACACTTCCTTCTGATGTGTAACGTCAAAGCTGAGGATGCTGGGGAAATTCGCTTTGTAGCCAAGGATGTTGAATCTACAGCTTACCTTGAGGTAGAAGAACTCCCCGTTTCCATTGTAAAACCCCTTCGTGACCGAACCGCCCTGGAGAAACACCGCGTGATCCTCGAATGCACCGTTTCCACGCCCCGCTCCAGCGTCACCTGGTACAAGGGCGGGGAGGAGCTGGTTCCCTCAGATCGAGTGGAGATCCTGGCCGACGGCTGCTCCCACAAACTGGTGATCCAGCAGGTGGCTGTAGAGGATGAGGGCACCTACAGCATCGAGGTGGGGGAGCACACATCCAAAGCCAAACTGATGGTGGAAGCCCAAGCCCTTGTAATGGTCAAGGAGCTAGAGGATGTGGAGGTAACTGAGCCTGGGCCCGCATCTTTCCAGTGTGAGGTGTCTGTCGCCATAAACAAGCCTCCCCTTTGGACTCTGAACGGAGAGGCCCTTCAGCCGGGCCCCTCCGTCCGCCTGGAAAACCACGGGACGGTCCACAAACTCACCCTGAAAAAGACCAGCGTGGACATGAGCGGGGTGGTTAAGTTTACAATGGGCAAGGCCAAGAGCAGCGCCACGCTCAGAGTAATGGACgagtagaggaagagagagagagaaaaagcaaGTGACTctgagagaaagaaggaaactGATTGCAAACATGGGAATTGCTCATGTCACCTAAAACATTTCATCATTTGTCATGTTTGGATAGCTTGCATTTCCCTGTTCTGAATGTGTTTCAAATTGAGGGTATTTAGTGAAGTTAGacagaacatttaaaatctgAGGCATGTAACTACAGTCAAGttatttcctcttctttttttttttttactgtgtagATGATATGTATTTGCCTGATAAAGACTTCTTTTTGACTTTACATTCTTGTATTCTGATGAAAacccccccaaaataaaaacacaaagtcaCAGTGGTTAATTA

Function

GO: NA

KEGG:

id description
K19574 OBSL1; obscurin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318193 lncRNA downstream 7127 12358763 ~ 12361269 (-) True G234311
TU318106 lncRNA downstream 83699 12278519 ~ 12284697 (-) False G234253
TU318107 lncRNA downstream 83699 12281511 ~ 12284697 (-) True G234253
TU318086 lncRNA downstream 98327 12200076 ~ 12270069 (-) True G234238
TU318091 lncRNA downstream 155787 12210934 ~ 12212609 (-) True G234240
XR_005638300.1 lncRNA upstream 19975 12402989 ~ 12424938 (-) True LOC120554060
TU318222 lncRNA upstream 49833 12432847 ~ 12434743 (-) True G234328
TU318227 lncRNA upstream 53982 12436996 ~ 12487330 (-) True G234330
TU318234 lncRNA upstream 104891 12487905 ~ 12489008 (-) True G234333
TU318278 lncRNA upstream 396572 12779586 ~ 12780160 (-) True G234373
XM_039792858.1 mRNA downstream 518573 11839717 ~ 11849823 (-) True LOC120554168
XM_039792842.1 mRNA downstream 644257 11718181 ~ 11724139 (-) False LOC120554156
XM_039792844.1 mRNA downstream 644258 11718181 ~ 11724138 (-) False LOC120554156
XM_039792845.1 mRNA downstream 644404 11718181 ~ 11723992 (-) False LOC120554156
XM_039792843.1 mRNA downstream 644404 11718181 ~ 11723992 (-) True LOC120554156
XM_039792660.1 mRNA upstream 219230 12602244 ~ 12644357 (-) False LOC120554061
XM_039792658.1 mRNA upstream 219230 12602244 ~ 12644357 (-) True LOC120554061
XM_039792661.1 mRNA upstream 219230 12602244 ~ 12644356 (-) False LOC120554061
XM_039792659.1 mRNA upstream 219230 12602244 ~ 12642973 (-) False LOC120554061
XM_039793523.1 mRNA upstream 414830 12797844 ~ 12885098 (-) True filip1l
TU318109 other downstream 75253 12287920 ~ 12293143 (-) False G234253
XR_005638322.1 other downstream 926470 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 1321437 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 1399286 10967423 ~ 10969110 (-) True G233954
TU317694 other downstream 1416916 10949523 ~ 10951480 (-) False G233954
TU318311 other upstream 570076 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 602803 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 673602 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 729144 13112158 ~ 13112228 (-) True trnag-gcc_27
TU318891 other upstream 2464820 14847834 ~ 14849737 (-) True G234898

Expression Profile