RNA id: XM_039792660.1


Basic Information

Item Value
RNA id XM_039792660.1
length 5662
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC120554061
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12602244 ~ 12644357 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tacatttcttcTATTAAGACTGTTTGCAGCTTCTCCGCTAATTAGAAAGGTCGGTGAACCTGACTTTGAGTTTACCCTCCGCGCCACGCTCTGGCTCCTGTCTCCTCGCTCTCCCTCTCCGCTCTGGCTGCGCGCTGCTTTCGGAGGGCTCCTTATAAATAAAATCCACCGTCCCTGGTTCCTCTTCCTTATTGGTCAGGTGGAGTCGTTACCTCACTCCGGGGCCGGTGACGCAGCGTCTTCACGTATCCTTCATGTGCGTCTCTTCTTGTTTCTTATTGAGAGTCTTGCCCTCGGCCAGAGCGGAGAAAACTGGATTCGCAACGAGCCGAGAGTGCCGGACGGACCGGGCGCGCTCCATACTAAACACTTCCCATCCCGGGAGAAGAGCGGCGCACAAgagcagtctctctctctctctctctctctctctctttctctctctctccctctctttctgggtctcgctctctcactctctctctcacacacacacacacatacacacacacacacacactttctctatGAGTTTTTCCGTCTGTCTTTCTCGctacctcccacacacacatacacacacacacacacactcacgcccGCGCGCACGCTCTGCATACGTCTCCACTTTGCCATAGTAAACTGAGCATTGATCTCAGCGACGAGTGCGGATCTGTCTCTTGTGTTCGCCCTTTCTTCGACGGACCGACTTGGAGAaacgcgagagagagagagagagaaGTGACTCTTCTCATCCGGCGCGTCTGTGAGGACCCCCCTGGTCATGTCCGCTTAGCTCCCCTGCGTGATGCCTGATCATGACAGCGCCACCCTCCTAACCAGACAGACCAAGCGCAGACGTGTCGACATCGGGGTGAAAAGGACTGTGGCTAGTGCGTTATTCAGCCGCGCCAGGGAGACCCTGCTTGAAAGCATGAACCAATCACGCGGCTCCGATCAGGACGGAGAATGCTCGCTGGTCGGTCACGGCCACGGCGGTGCCAGCGGCGACGGGGAGAAGTCGAATGTTTTGAGGAAATTGCTCAAGAGGGCCAACTCGTACGAAGACGCCATGATGCCTTTCCCTGGTGCTACCATCATCTCTCAGCTGCTGAAGAATAACATGGGGAAGAATGGAGGGAGTGACTCAGGCTTCCAgGGGAGTGGAGCTCTGTCCAGTGGAGGCTCGGAGGTCCACGCCGAGGACGCCTGCAGCAACTCCTCCCGCGACAGCCCGTCTGACTGCCTCTCTCCCGGGCCTCCTCTTCCCCCTCcaccttcttcctcctcctttggGCGACCGGTGCCTCCTTCAAGCCTCAACTCCCACGCTCCCTCTCagcccctctccctctccaccTTCGACTTGGACAGGCTGTCGGACGAGCACCTCCGCGCCAAGCGCGCCCGCGTGGAGAACATCATCCGCGGCATGAGCCACTCGCCGCTGGTCCGGCCCAACGGCGACCACGGCCAAGAAAGCAACCGCGAAAACGAGACttgcagcaacaacagcagcagcggcggcagCAACGACCGGCGAGGAGACGGCAACAGTCACGGCGCCAGCGGCCACGACCACAGCCGGAGCGACGGCCCTTCTTCCCTCCTGAGCTCTCCGGGCTCGCGGGGCGGCGTGGGCGGCGAGGTTTATagggagaataaaagaaagcagCGCCtgccgcagcagcagcacagcttCACGCAGCTGGTGTGTTCCAGGCAGGAgcagagacaggaagagagacgGCAGCTGAAACTGCAACTGGAGGACATGCAGAAACAGCTGCGTCAACTCCAGGAGAAGTTCTACCAGATCTACGACTCCGAgacggaggaagaggaagagcacGGCGAGAGCAGAGAGGCCGACCGaggtggagaaagagaggaggacgGTAACTTGTCAGAGGACAGCATCCGCTCCGATGGCCTGGAGGACAGGTACAGAGACAGAGGGCGGCGtagcaacgacgacctgtctgAACTGGACCCAGGCCTGTTTCTGGACCGGGCCCGGGCCCTCCTCCGAGAACAGGCCCTGATAGACGGAGAaatggaggaggatgaggagaggaACGTAGATAGGGTGAttaagaggagaggaggagtggCAGGAGGAGGTAGGCAGCTTGCAGAGACGCTGAAGCAGGAGCTGAACTGCGCCGTGTCGCAGGTCGTCGACACCGTCGTCAAGGGCTTCTCCTCGCCCAAGCCGGCCGTCGGCCACCATCATGGCTGCCACGGCGGCACACCGGCTGCACCCTCCTCTTCTTCCAACTCGTCCTCTTCCTGTCCTCCACCGTATGggcccctcccctctctcaccCCGGACACCCGCTTCGGTGGTGGCGCGCTGGCCCTCAGTATGAACGGCGACGGCAGTCCGACCCCGAGCTACCACTCCTCCAACCAGAGGCTGCACTGCTTCGCCGACGTAATCGTCCCGAGCCCGCTGGACTCATTCGGCGGGTTGAGCGGCAGGCTGAGCGGTTTGCCGACGTCCAGCGACCAGACTGAGGCACTGCCACTGGTGGTGCGCAAGAGCGGCGGAGGGGGCGGAGGAGAGAACGCTAacgcctctcttcctcctcctcctcctcctcctcctcctcaccatcCCTCGCTCCACCCCTCTCCCCTCACGGCCTCGCTCGGGTTTAGCCCTCCATCCTTTCGCCACCCGTTCCCTCTTCCCCTTATGGGTTACCCCTTCCAGAGCCCCCTTTCACACGGGGGTGGCGCTGGCTACCCTCCGGGGCCCAAGGACCTTCATCGGTCCTCCCCCGATTCTATGGACATGACCCGGGAAACTGTCAGCCTCAGAACCAAAATGGCATCCCTCGGAGGAGGCCATCTCagtcaccaccaccaccaccaccaccaccacaggcAGAGCTCACCGGGCCAACATGGGCCAGAGGGCCTGTCCCTGTCCCTCATAAAGTCTGAGTGTGGAGACCTGCAAGACATGGCCGACATATCGCCCTACTCAGGCAGCACCATTCAGGAGGGCTTGTCTCCCAACCACCTGAAGAAGGCCAAGCTGATGTTCTTCTACACCCGCTACCCTTCCTCCAACATGCTCAAAATATTCTTCTCAGACGTCAAGTGGGGAATCTGGGGGCAAAGAAGACAGAAAAGGCCACTGCAAGATTTCAATCGCTGCATCACCTCCCAGCTGATCAAGTGGTTCAGCAACTTCAGGGAGTTCTACTACATCCAGATGGAAAAGTTCGCCCGGCAGTCCATCAACGAGGGCGTGACCGCCTCAGAGGAGCTGGTGGTGGGCCGCGATGCCGAGCTCTTCAGGGCGCTCAACATGCACTACAACAAGGCCAACGACTTTGAGgTTCCTGAACGATTTCTGGAGGTGTCCCAGGTGACCCTGCGCGAGTTCTTCAACGCCATCGTGGCGGGAAAGGACGCAGACCCGTCCTGGAAGAAGGCCATCTACAAGGTGATCTGCAAACTAGACAGCGAGGTTCCCGATGTCTTCAAGTCCCCCAACTGCCTACAAGAACTCCTCCATGACTGACTAGGGCGAGGACGGAAACGCAGCGAGCGAGACAAGCCTCCGAGGAGCGTGAGACGACCGTGAGAAAGTGAGGCTGAGGTCTTCGGTAAAAACATGCGTTTGATGCCGAGACTTGGTTTTCCTCGGACGCTTCTGGAGAGGTTTttttggtggttgttttttttttttggggtcagcCCAACGTTTAAAACACAAGCCTGCCCTCAAAATGTTttatacaggaaaaaaaaaataaaaatagtccTCTTGACCTCTTGGCTCAAGAGTCGGACAATACTCAAATTAAGATATTGTGTTGAGACTTTTACCAATTAAAAGCCAAACAGTGGAAATCCTTGCACTTACAAAAACAGCTCCTCCTTTGCCGAAAAAACCCCCCCctgtcttctctttctcctccaccTCGTCCGAGCTCGCTCTTCGTCCTTCTCTGGAGGAACAAAAAGGTATGAGGAAGATGATGGATCAATCTTCAGCCCGTGACTTGGGGGTTAGGGAGCAAACTAAATATAAAGATGataatatataaagaaaatctTTTTATTGTGGATGTTTTTGAGTTAGATGGACATttttggggagaaaaaaaaggtgatgtttctgcatttttttttcttctttgtatgAGCTTACAGCCTCTTTACTATAAACCCTCAGTCGATCGCGTAGATACCCatgcacacacaaccacaaacacacacacacgcacacgcacacctcTTGAATAGGATCGCACAGTAGCATTCCCAAATCCTCACTTGAACCCAGACAAAATGGACATAAATACACTTAGTTGTGGTTTCTTTcccttcttttttccccctcctcttTTTTACTACTCGCTCTTTTTACTGTACCGAGACGTACTGGGTGTTTGTTCTGACTGTTGCTCTCCCTGCCCCACCCTTCCCGTGCTGCCCCTCTTTGCTCATGTTGCATTCAGGCACCCAGAGCATcgaagacaaaaaaacaacctttttttttttctttttttttataatctctCATATCTAGAGTCCCGTTTTTACAATATCAGAAAAATAGGTAATGCAGACATTAGACAAACTGTatggacattttattttaagcCGTCATGAATCAGATTGATCCTTAACCTCCGTTACCGCAATTATTTCACTAAATTACTACAGCCTGACCAACGTGACACATGCTGATATTGACAGAGAAtggccccctttttttttcgttgtttttacttaacagactttttttttgtattattaaaatgttatgtATGATATGTGACAAATTTTTGTACTGAGAAGGTCAGTTATTTCAGTGATTTCTGGTGGACGCTGTTTCTCATTGAACATCTGACAGAGAAATACATCTGTGATAggctaatactgtatctggtcCAACTACTACTGGTTTATTTATCACATTTTCAATATATAGCACTGATGCTGGATACATTCAGGACACATTGTGGACATGTTAGTGCTGTAACAATTTTtggtattcatttatttatttttttttctttataatcTGTGTTGGATGCTTCATTTGTTTTCTCAGAACATTCAAAGTCCTAatctgaaagaaaagaaaaaaatcacatttgcaTCAATTTGTGATTTCATTCAAGTGGATTCACTGTATTGTAAATCATTGTTGTGAACGTAATTTGAATCACCATTTTGTAACAACGACCAGGAACCCAAACCCATTCATTCCAGTTCCATGTGCTTCGTAGATCCCTTTCTAAGCAGCACGTCATTCCCACATGATACAAACACAAGAATCATTCTTCCTGGTGCTCTGGGACAGGCTAACCTTTGGCAACACACAAGTACTGACTGGACTCAAGCACTTGCACAGAGGATTTTAGCACTGAAAAACACCGGCGACTAACCGTGGTACAATCAGCCGTTCTCAAAATTGAGCTCATACATTCAGAGGTGTCAAAATGTCTCATTTTAACCCTGTTTCGTGCTGAGAACCTTGAAACTGGAAGTCACCGTAAGTTACCAAACCACTATtggaaaaaaatagatttttctcTTTGCTCTGGGTGGCAGACCAACAGACGGGCAGCTGCCCCGGCCGGGTCATGTGTGTGAAGTGTTTAAGGTTTTAACagcagtaaacaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318234 lncRNA downstream 113236 12487905 ~ 12489008 (-) True G234333
TU318227 lncRNA downstream 114914 12436996 ~ 12487330 (-) True G234330
TU318222 lncRNA downstream 167501 12432847 ~ 12434743 (-) True G234328
XR_005638300.1 lncRNA downstream 177306 12402989 ~ 12424938 (-) True LOC120554060
TU318193 lncRNA downstream 240975 12358763 ~ 12361269 (-) True G234311
TU318278 lncRNA upstream 135229 12779586 ~ 12780160 (-) True G234373
TU318280 lncRNA upstream 139634 12783991 ~ 12785943 (-) True G234375
TU318363 lncRNA upstream 344016 12988373 ~ 12991438 (-) True G234434
TU318408 lncRNA upstream 517375 13161732 ~ 13162096 (-) True G234478
TU318420 lncRNA upstream 555621 13199978 ~ 13200294 (-) True G234490
XM_039792657.1 mRNA downstream 219230 12368396 ~ 12383014 (-) True obsl1a
XM_039792858.1 mRNA downstream 752421 11839717 ~ 11849823 (-) True LOC120554168
XM_039792842.1 mRNA downstream 878105 11718181 ~ 11724139 (-) False LOC120554156
XM_039793523.1 mRNA upstream 153487 12797844 ~ 12885098 (-) True filip1l
XM_039793524.1 mRNA upstream 153487 12797844 ~ 12853580 (-) False filip1l
XM_039793526.1 mRNA upstream 153493 12797850 ~ 12813762 (-) False filip1l
XM_039793525.1 mRNA upstream 160488 12804845 ~ 12885095 (-) False filip1l
XM_039793135.1 mRNA upstream 307064 12951421 ~ 12954215 (-) True LOC120554312
TU318109 other downstream 309101 12287920 ~ 12293143 (-) False G234253
XR_005638322.1 other downstream 1160318 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 1555285 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 1633134 10967423 ~ 10969110 (-) True G233954
TU317708 other downstream 1651615 10949523 ~ 10950629 (-) False G233954
TU318311 other upstream 308733 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 341460 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 412259 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 467801 13112158 ~ 13112228 (-) True trnag-gcc_27
TU318891 other upstream 2203477 14847834 ~ 14849737 (-) True G234898

Expression Profile