RNA id: XM_039792667.1


Basic Information

Item Value
RNA id XM_039792667.1
length 1917
RNA type mRNA
GC content 0.47
exon number 6
gene id slc19a2
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14356830 ~ 14399370 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAGCAGTATGTAAGAAGTATAATAACAAAGATTCTCTATACTGTAATAAGTAGCAGTTAGTTGTGGAGCCGAGGCAATGCTGGTGAGTCCAACATGTCTGTGCTCAGCCCAACTGTTCTGCTCTGTGTGTATGGCTTCTTTTCCAATCTCCGGCCGTCGGAGCCTTTCCTCACCGCCTACCTCATGGGACCAGACAAGAACCTGACAGAGACTCAGGTCGTCAATGAAATCTATCCAATTTGGACGTATTCCTACCTGGTGTTGCTGTTCCCCATCTTCCTAGCCACTGACTACCTCTGTTATAAGCCTGTATTGGTCCTGCAGGCCATAAGCTTAGTAGTTACCTATGTTATGTTGCTAAAGACACAGGGCATGCTGACAATGCAACTCCTGGAATGTTTCTTTGGGCTGGCCACGGCCTCGGAGGTGGCCTACTACTCCTACATCTACAGCATCGTGGAGCCGGCACACTACCAGAGAGTGACGGGTTACTGCCGCAGCATCGCTCTGTTTGGATCAGCTGCTggatctctgattggtcagctccTGCTCTCTGTGGCCAGAGTTCAGCTGGTCCACCTTGTCATCATCACTCTGACGTCAGCCGCTGTGGCCTGTGTTGCTCCCTGGTTTCTACCCATGCCCAAGAGGAGCTTGTTCTTCCACAAGAGTCCAGGACCAGCAGAGGAAAAGCCAGGCAGCAGCACAGCACTGTTGGAAAAGGCTGGGGATTCAGAGAGTGAATTGCCTCTAAACAGCCAGGATGTCTACACAATGTCCAGGTCCTTTAACACAGGAAGCCATAACAGTGGTCTTGTGGAGGTGTTACGGATACTGTTTGATGACTTCCTGCAGTGCTACAGGTATCAGCCCCTGCTTGCATGGTCGCTGTGGTGGGCACTGGCCACGTGCGGCTACTTCCAGGTCATCAACTACGCTCAAGCATTATGGGAGAACGTTCGTCCATCCCAGGACTATGAAATCTACAATGGCTACGtagagacactgtccacagtgCTAGGGGCTCTGGCAGCTCTGCTGGTGGGCTACCTGCCTGTATGCTGGGCTCTGTGGGGTGAGCTGGCTCTGTGTGCCCTCTCCCTGctgatggctgtgtgtgtgtttgtcatggACACACTGAGGAACATCTGGCTATGTTACAGCTCATACGTCCTCTTCAGAGCCACATACATGTTGCTCATTACTGTGGCTACATATCAGATTGCAGCTAGTCTCAATATGCATCGCTATGCCTTGGTGTTTGGAGTAAACACCTTTGTGGCTCTGCTGCTGCAGTCTCTCCTcactgtggtggtggtggactCAGCTGGCCTCGGGCTCAACATTTTCACTCAGTACCTCATCTATGGCGGTTACTTTGCTGTAATTTCAATGGTCTTTCTCCTTGCTGGGCTTTGCAAATTGGCCTACAGGAGACGCTCCAAACAAGAGGAGGAGGGCCTGGCCAACAGCCAAGCTTAAAGAGTCAGACTCTCCTCCAATCAGATGcaaataggacatacattatATTGATAGATCTTGTTTAGCTTCTCACATACTAAGCACCATAGGTGAGCTTCTCTAATCTCTTTAACCGCATAGTTGTTTTCATTGTATTGTTCTGTATAATGACTGCAGGCTACTCTCTGTGGCTTTGCCTACActtattaaaacattatttgtcACATATTTGTCCATTGCCCAGCTTATTGAATTGGTGCAATAGACTTGATGTGAAAAAATTTTTTGCAAAAATTTGTGTATGTTTTCACATATGTTTTCACATGAGaaatattgattgattgactgattgatttaaaagctaaataaaaactaacaaTGGTACCTTAATAGTACTActacttacagtacaggccaaaagtttggacacacctcctcattcaatgtgtttcct

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318727 lncRNA downstream 430 14356095 ~ 14356400 (-) True G234752
TU318711 lncRNA downstream 59453 14297080 ~ 14297377 (-) True G234736
TU318672 lncRNA downstream 136662 14195210 ~ 14220168 (-) False arhgap1
TU318670 lncRNA downstream 144692 14194312 ~ 14212138 (-) False arhgap1
XR_005638310.1 lncRNA upstream 78056 14477426 ~ 14483964 (-) False LOC120554079
TU318761 lncRNA upstream 78056 14477426 ~ 14484029 (-) True LOC120554079
XR_005638309.1 lncRNA upstream 78064 14477434 ~ 14483964 (-) False LOC120554079
TU318784 lncRNA upstream 138471 14537841 ~ 14542320 (-) True G234802
TU318814 lncRNA upstream 199766 14599136 ~ 14600022 (-) False G234828
XM_039793277.1 mRNA downstream 57140 14290673 ~ 14299690 (-) True LOC120554388
XM_039793274.1 mRNA downstream 66787 14201336 ~ 14290043 (-) False arhgap1
XM_039792673.1 mRNA upstream 1495 14400865 ~ 14419991 (-) False atg3
XM_039792672.1 mRNA upstream 1495 14400865 ~ 14419991 (-) True atg3
XM_039792675.1 mRNA upstream 34938 14434308 ~ 14446096 (-) False LOC120554074
XM_039792674.1 mRNA upstream 34938 14434308 ~ 14446096 (-) True LOC120554074
XM_039793117.1 mRNA upstream 146370 14545740 ~ 14569910 (-) True LOC120554302
unassigned_transcript_1568 other downstream 1244602 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 1300143 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1566 other downstream 1370942 12985817 ~ 12985888 (-) True trnae-uuc_66
TU318311 other downstream 1402705 12953090 ~ 12954125 (-) True G234405
TU318109 other downstream 2063687 12287920 ~ 12293143 (-) False G234253
TU318891 other upstream 448464 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1569 other upstream 562991 14962361 ~ 14962433 (-) True trnar-ccg_4
XR_005638386.1 other upstream 570152 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1570 other upstream 1386951 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 1388957 15788327 ~ 15788399 (-) True trnak-cuu_17

Expression Profile