RNA id: XM_039792842.1


Basic Information

Item Value
RNA id XM_039792842.1
length 2220
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC120554156
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11718181 ~ 11724139 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTCGTCTCCCTCGTCCTCCTCTCCGTGTTGTTGTTCTCGGTGACGCGACGGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGTCTGAATAAAAGTGGAGCTCCGTAGACCCGGGAGTGACGAAGCGAGTCTGTGTTGATTTTAAACGACAATGGAGGCTGGTGCAGACACACAGCAAAGTGGTGAAACAGTTGTCTCAGAGTCTGAGACCCAGCAGATCACCATTGGACAGACAGGGTATGAATGTGGGTTGTCATGGTTGCAGGCGTCCATAGCAGCTGGCCAGGTGACATCCAGCGGTCCCACAGTCACCCTTGTGCAGTTACCCAACGGTCAGACAGTCCAAGTGCACGGGGTGATCCAAGCTGCTCAGCCCTCTGTCATCCAGTCCCCACAAGTCCAGACTGtacagATTTCGACTGTTGCTGAGAGCGAGGACTCTCAGGAGTCTGTAGACAGCGTGACAGATTgtcagaagaggagagagatcctGTCCAGACGTCCTTCTTACAGGAAGATTCTGAATGATTTATCGTCGGATGCTCCAGCAGTGCCTCGAATTGAGGAAGAAAAGTCTGAGGACGACACAGCCCCTGCCATCACCACAGTCACCATGCCCACTCCCATCTATCAGACTAGCAGTGGCCAGTACATTGCCATTACCCAGGGTGGGGCCATCCAGCTGGCCAATAATGGCACAGATGGAGTGCAGGGCCTGCAGACGCTGACCATGGCCAACGCCGGCCAGCAAGGTGCCACCATCCTGCAGTACGCCCAGACCAGCGACGGGCAGCAGATCCTAGTGCCCAGCAACCAAGTGGTTGTACAAGCCGCCTCAGGTGATGTCCAGGCCTATCAGATACGCACAGCCCCCACCAACGCCATCACTCCTGGGGTTGTCATGGCGACTTCGCCCGCGCTGGGCACAGGAGGCGGCACTGAGGAGGTCACACGCAAAAGGGAGGTCAGACTTATGAAAAACAGGGAGGCCGCCCGCGAGTGTCGCAGGAAGAAGAAGGAGTACGTCAAGTGTCTGGAGAACCGCGTGGCCGTGCTGGAGAACCAGAACAAAACCCTCATCGAGGAGCTCAAAGCCCTCAAAGACTTGTACTGCCACAAATCGGAGTAGAAAACGTCGCCAAAACCGCCTGCCAGGGGCTCGACAGGTGCCCGTCTGTCCCCATGTACAGAGACTCAGCACAGAGCCATGCATCTGGATAACACTCCCCACCCCTCCACCCCACCCCTTTTCTActcttttgctttcttttttaaaaactgcTGAGAAATCTTTAAAGTGACTCACCAGGATTAGAAAAACcaaccacccccacccccatcccCCTTCAGCGATCAGTCAGAGAAGCAATGTTCAGAGCAGACGCGTGGAGGAGACTCCAACTATACAGGGTCCTCGTGGTGAAGTGATGGAACGGACAATGAggctgttgtgttgtttttttttggacgccaccaaaaaaaaaaagggaagcatTCCAGTCACTGGTGCCTGGACAAACTAGGCAACGTCACCAGCAACGGGGGGGAACTGCTCACTTTAACCATCACCACCAACAAACGACAGAACTTTTTACGTCAGAACGTTTAATCTCCCCCAAGACACTCGGATCATTTGGAGAGGTTACTTTTGTGTGCAATGTTTGTAACCGTAACTGCGCTCTTTGCATTAACATCTGTTACTTAACTAATGCTTTGAACTGTAGATGGGCCGCGCCACGGACATTTTTATCTTTTAGCTGTGATTTGTTTCATGTATTGGATTATCTGCTTGCATAATgccaatgacttttttttttttactttgaattTACTTTGCCTTGATAtgacatgaacaaaaaaaaaaaacccgctAACCATTACGTAAGGTTGTAGATGGTTTCCGTGTTAAATGCAGCTCTGAAAGAGCGCGATGAAGAGAGACCGTAAGTCAAACCGTCTCTCGAGTGGAACTCTTTAAGTGTTTATTTGGTCTCTGATGCATGTCCCTTCCTTCCCAATCATATGACTAAGGCTCATTAACAAAAACATCCCCATAAAAAAGGAGCAGAATAGTTTAAACAGATTTAAACATGGTTTATGTGCTCACCGGAGGTCACGAGTAAACTGGCTCCGTGGATTATGGATTTTTCAatccatttttttgtatttgttatttgATTAATTCCTGGATTCTTCttgaataaaacagaaaaataa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318011 lncRNA downstream 33014 11684622 ~ 11685167 (-) True G234181
XR_005638325.1 lncRNA downstream 96828 11620869 ~ 11621353 (-) True LOC120554169
XR_005638326.1 lncRNA downstream 97325 11619834 ~ 11620856 (-) True LOC120554171
TU317991 lncRNA downstream 191879 11524445 ~ 11526302 (-) False igfbp5a
TU317975 lncRNA downstream 228704 11458937 ~ 11489477 (-) False LOC120554153
TU318026 lncRNA upstream 74424 11798563 ~ 11822502 (-) True G234194
TU318069 lncRNA upstream 398101 12122240 ~ 12201428 (-) True G234225
TU318086 lncRNA upstream 475937 12200076 ~ 12270069 (-) True G234238
TU318091 lncRNA upstream 486795 12210934 ~ 12212609 (-) True G234240
TU318106 lncRNA upstream 554380 12278519 ~ 12284697 (-) False G234253
XM_039792839.1 mRNA downstream 3031 11708327 ~ 11715150 (-) True LOC120554155
XM_039792840.1 mRNA downstream 3033 11708327 ~ 11715148 (-) False LOC120554155
XM_039792798.1 mRNA downstream 33748 11567571 ~ 11684433 (-) False tns1a
XM_039792858.1 mRNA upstream 115578 11839717 ~ 11849823 (-) True LOC120554168
XM_039792657.1 mRNA upstream 644257 12368396 ~ 12383014 (-) True obsl1a
XM_039792660.1 mRNA upstream 878105 12602244 ~ 12644357 (-) False LOC120554061
XM_039792658.1 mRNA upstream 878105 12602244 ~ 12644357 (-) True LOC120554061
XM_039792661.1 mRNA upstream 878105 12602244 ~ 12644356 (-) False LOC120554061
XR_005638322.1 other downstream 276255 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 671222 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 749071 10967423 ~ 10969110 (-) True G233954
TU317694 other downstream 766701 10949523 ~ 10951480 (-) False G233954
TU318109 other upstream 563781 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1228951 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1261678 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1332477 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 1388019 13112158 ~ 13112228 (-) True trnag-gcc_27

Expression Profile