RNA id: XM_039792858.1


Basic Information

Item Value
RNA id XM_039792858.1
length 942
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC120554168
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11839717 ~ 11849823 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTATGATTAGGGCTGCGGCGAGGGAAGGAGGCTGCCACTCGGAAAGGGCAAAGGCGCAGTTGGCGCCTTCTTGTTGACCGCGCACCACGAGCTGCGGTTCATTTATCTGTACCGTTGTGGTGTGGATCCCGAATCAGTGGCTTTGTGGCTAAAATACTTGAGGGAGAATGAGAGTCGCGACCTCCAGGGTGTGAGCAGAGTGCGCAAAACGTCTTGGAGTACGGCATGGCTCTGGAGAGCGCGTCGCTCCTGAAAGCGGGGCTTGTGTTGTTGATGGCAGCTCAAGTCCTTCCATCAGCGTCCAGCTGCAACAGGGGTTTCTACGAGAGGATGATCAATGATCTCTGCTTAGCGAAGTTCAAATTCGACATGGGGGCGCTGGACCAGGGCCTGTGGTGCAGCTGGCCGGACACCATGGAGATCTACGAGGGGCTAACAAACTGCACCTTCCAGGTGGCCTTGAGGGTGGACTGCTTCTGGCCAAATCAGATAGTTGACCGCTTCTTCACGCAGGTTCACCGGATCTACTTCCACGACTGCGCTCTGACCGGCCGGCTCATCCACGACCCGCCGACCAGCATCCTCGCCCCGTTTATCGCAGTGCCAGTGCTGGTCACCCTGCTCATGACTGCCCTTGTGGTGTGGAGGAGTAAACGCACAGAAGGGGTTTTATAAGGACTGGCTTCTGGATTGGGGCACAAGGCTTGTAAATACAAATGGACTCCCGAGGGCCAATGACGGAGCATGGGAAAAAAAggttattttataaaatattaagtTGATGCACTTATACTCCTTGTCTTTCAATTGTGCTATTCCCATATTAGTATGCATATTATTGTATAGACCATTGCATGTCTCATGAAAAACTGTAGCAGACTTTAAAACAGTAGTATGTGTaataaaaaactgtttttgctATAAATGTGATTGAAATTGA

Function

GO: NA

KEGG:

id description
K08447 RAMP1; receptor activity modifying protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318026 lncRNA downstream 17215 11798563 ~ 11822502 (-) True G234194
TU318011 lncRNA downstream 154550 11684622 ~ 11685167 (-) True G234181
XR_005638325.1 lncRNA downstream 218364 11620869 ~ 11621353 (-) True LOC120554169
XR_005638326.1 lncRNA downstream 218861 11619834 ~ 11620856 (-) True LOC120554171
TU317991 lncRNA downstream 313415 11524445 ~ 11526302 (-) False igfbp5a
TU318069 lncRNA upstream 272417 12122240 ~ 12201428 (-) True G234225
TU318086 lncRNA upstream 350253 12200076 ~ 12270069 (-) True G234238
TU318091 lncRNA upstream 361111 12210934 ~ 12212609 (-) True G234240
TU318106 lncRNA upstream 428696 12278519 ~ 12284697 (-) False G234253
TU318107 lncRNA upstream 431688 12281511 ~ 12284697 (-) True G234253
XM_039792842.1 mRNA downstream 115578 11718181 ~ 11724139 (-) False LOC120554156
XM_039792844.1 mRNA downstream 115579 11718181 ~ 11724138 (-) False LOC120554156
XM_039792845.1 mRNA downstream 115725 11718181 ~ 11723992 (-) False LOC120554156
XM_039792843.1 mRNA downstream 115725 11718181 ~ 11723992 (-) True LOC120554156
XM_039792839.1 mRNA downstream 124567 11708327 ~ 11715150 (-) True LOC120554155
XM_039792657.1 mRNA upstream 518573 12368396 ~ 12383014 (-) True obsl1a
XM_039792660.1 mRNA upstream 752421 12602244 ~ 12644357 (-) False LOC120554061
XM_039792658.1 mRNA upstream 752421 12602244 ~ 12644357 (-) True LOC120554061
XM_039792661.1 mRNA upstream 752421 12602244 ~ 12644356 (-) False LOC120554061
XM_039792659.1 mRNA upstream 752421 12602244 ~ 12642973 (-) False LOC120554061
XR_005638322.1 other downstream 397791 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 792758 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 870607 10967423 ~ 10969110 (-) True G233954
TU317694 other downstream 888237 10949523 ~ 10951480 (-) False G233954
TU318109 other upstream 438097 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1103267 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1135994 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1206793 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 1262335 13112158 ~ 13112228 (-) True trnag-gcc_27

Expression Profile