RNA id: XM_039792918.1


Basic Information

Item Value
RNA id XM_039792918.1
length 1184
RNA type mRNA
GC content 0.53
exon number 6
gene id dhrsx
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20375593 ~ 20380492 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGACTCATTAGCGTGACGCACAGCCGCACTCGGAAGCTGTCTGGACgtagacagagagcagagagatgtGGCTGCTGTCAGTGCTGCTGCCTCTTCTCAAGCTCTATTTCTGCGGAGTCAAAGTGCTTCTCTATCAGACCTTCAACAGAGCTTTCACGCTCCCAGTTTTACCCAGGCAGGATGGAAGAGTTGCCATGGTTACCGGGGGAACCAGAGGAATGGGTTATGAGACAGCCAAACACCTGGCGAAGCTCGGGATGCATGTTGTCATAGCAGGGAACAAGAGAGAAGAAGGTGCAGCGGCCGTCCGGAGGATTCAGGAAGAAGACAGCCAGGGCAAAGCGGGAATCATGATGGTTCCTGAGGGGCAGACGGAGGATGGCGTTGAGATCCACTTTGCTTTGAACTACCTGGGTCACTTCCTGCTGACCAACCTGCTCCTGGACACGCTGAAGCGCTCGGGCCGGCCAGGCCGCTGCTCCCGGATCATCAACATGTCCTCGGCGACGCACTACGCAGGAGAGATGCACATGGACGACCTAAACAGACGGATCTGCTACAGTTCCCACAGCGCCTACGCCCAGAGCAAACTGGCTCTGGTGCTCTTCACCTACCACCTGCAGGAGCAGCTGACGGCCGGCGGCTTCCCGGTGACCGTTAGCGCTGTGGACCCCGGCATGGTGGACACGGCGCTCTACGACAACCTGTGGAGTATCGTGCAGGCGCTGAAGAAACCCGTGGCCAAGATCCTGTTCAGGACTCCAGCCGAGGGAGCGTCCATATCGGTGTACGCTGCAGCTGCCTCTGAgatggagggggtggggggctgTTACCTGTACAACGGCCACAGGAAGCAGTCCTCGGACACTTCCTACGACTCAGAGCTGCAAGCCAAGCTGTGGAAGAAGAGCTGCGAGCTGGTGGGCCTTCAGAAGGCCTGACTCCTCCTCTAATCACCTCTGGTCTGTCGGATGAACTGTACGTTTTAGACCTGGAGACATTCTAATCAAATGtccagtttatttgatgatatTGCACAATCATTTTTCCCATGATCACTGAGAATGaatataatattaatttatagtcaatgtgaatattgttgtaTCAACAGATTAAGGAAGATGTCCCATTTATTACAATACGTTAATAAATGCTAATAAACAAATTGCCTTTGAGAGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320555 lncRNA downstream 2352 20373000 ~ 20373241 (-) True G236279
TU320534 lncRNA downstream 62766 20305493 ~ 20312827 (-) True G236261
TU320521 lncRNA downstream 102859 20271475 ~ 20272734 (-) True G236249
TU320520 lncRNA downstream 104180 20270484 ~ 20271413 (-) True G236248
TU320519 lncRNA downstream 106926 20267867 ~ 20268667 (-) True G236247
TU320560 lncRNA upstream 2659 20383151 ~ 20394034 (-) True G236282
TU320575 lncRNA upstream 96694 20477186 ~ 20479038 (-) True G236293
TU320577 lncRNA upstream 98663 20479155 ~ 20480319 (-) True G236294
TU320595 lncRNA upstream 128735 20509227 ~ 20511076 (-) True G236303
TU320601 lncRNA upstream 157409 20537901 ~ 20538114 (-) True G236309
XM_039793144.1 mRNA downstream 619624 19749071 ~ 19755969 (-) False pnpla4
XM_039793143.1 mRNA downstream 619631 19749071 ~ 19755962 (-) False pnpla4
XM_039793142.1 mRNA downstream 619631 19749071 ~ 19755962 (-) True pnpla4
XM_039792553.1 mRNA downstream 721281 19622102 ~ 19654312 (-) True aox6
XM_039793147.1 mRNA downstream 753942 19608622 ~ 19621651 (-) True bzw1a
XM_039793653.1 mRNA upstream 62489 20442981 ~ 20456063 (-) True LOC120554635
XM_039793228.1 mRNA upstream 413854 20794346 ~ 20802270 (-) True LOC120554361
XM_039793230.1 mRNA upstream 413854 20794346 ~ 20802205 (-) False LOC120554361
XM_039793229.1 mRNA upstream 413854 20794346 ~ 20802202 (-) False LOC120554361
XM_039792558.1 mRNA upstream 464809 20845301 ~ 20850464 (-) True rgn
TU320553 other downstream 7160 20367341 ~ 20368433 (-) True G236277
TU320378 other downstream 643056 19731319 ~ 19732537 (-) True G236111
TU319844 other downstream 2630393 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 3272076 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 3467175 16908345 ~ 16908418 (-) True trnat-agu_62
TU320640 other upstream 345911 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 346038 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 380216 20760708 ~ 20760992 (-) True G236349
TU321082 other upstream 463000 20843492 ~ 20853383 (-) False rgn
TU321084 other upstream 463000 20843492 ~ 20853383 (-) False rgn

Expression Profile