RNA id: XM_039792931.1


Basic Information

Item Value
RNA id XM_039792931.1
length 4855
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC120554200
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17775532 ~ 17807753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTCCAGAGCTCCGACAGACCGGACCAGAGACACACGGGAAGCGGCGTGTCTGCGCATCTGTCACCGTTACAAACTTCATGGACTGGTCGGAGGGGGGGTGGACGAACGATAATCTTAtttccaccttttctttttaacatctatcctttttttccctttttctttttttggtcttCCAGTCAAATGTCAcgagggaaaagaaaaagaggaaaaagtctCTCCATCGGCTCTTATGTTTCCCCCTATTCTCACTGAGCCGCCACTCCGAGCGTTCGGGCGTCCAGCCAGCAGGAGATGAAAAGCTGCCAATGAGCGATTTCTACGTTGAGCACCAGCCATGGCTGCCCATCGCATCATCAGAGTGACGAACAACAATAACGTCCTTCCTCGCTGCAAGTCTGAGGGGACGCTCATCGACCTTAGCGAAGGGTTCACCGGGGCCAGTCTTAACGATGTCAAAGTGCCTTCTCCCAGTGCCTTAAGGCTGGATACTTCAGCCTCCTATGGAGCTGCGCAGGAAGTGGTTGCCATAAAGGATTATTGCCCCAGCAGCTTCACCACGCTGAAGTTCTCCAAAGGGGATCGCCTCTATGTGTTGGACAcgtcaggtggagagtggtggtaCGCCCACAACAACACGGAAATGGGCTACATCCCAGCCGCCTACGTCCAGCCGGTCAACTTCAGGAACTCTATGCTTAGCGACAGTGGGATGATTGACAGTCTCGGGGAAGGATACGAGGATGGGTCAAAGGAGTTTGGAGGTTTGGGGGAGTGGACAGGGATAACCCTTAAGCCCTCCCCAATTTACAACAACAGTCCCCTCTCTCTGAACCCCTTTATCCATCCGTTAGATCAAAACTGCAAAGATATAGGTGTAAGGAACTCAACAGATCTTATTCTGTTTGATGCACTGGCATCTCCATCATCTTGCTCAAACTTTAACACCAATACAATCATGACCAATGGGTTCAGCAGCTGCCACATTAACAATACCACCCTCACCAGCCCAAATCAAGCGGTTGGACCTAACCTCCACAGGGATAACCCGTTTTTTAGGGGTAAACGCTCCCACAGTCTCTCAGAACTGTCAGTCTTGCAGGCGCAGTCGAATCCAACCTTACCTTCCTCTGGATTCTTCACAGGCCTTAAGGCTCCTTCACCGGAGCAGTTTCAGAGCAGGGAGGACTTCAGGACTGCTTGGTTGAACCACAGAAAGCTAGCCAGGTCTTGCCATGACCTTGACTCCCTGGGTCAGAGTCCTGGGTGGGGCCAGACGCAGCCGGTGGAGACCAACATTGTGTGCAAGTTGGACAGTAACGGAGGAGTTGTTCAGCTCCCGGACACCCAAATCACCATACACATCCCTGAAGGCCACGTCAGCCATGGAGACCACCAACAGATCTCCATGAAAGCGTTACTAGATCCTCCTCTGGAGCTCAACGGTGACCACTGCTCCACTGTTAGCCCCGTGGTGGAGATCAAGCTGAGCAACATGGAGACCAGGTCCTTTATCACGTTGGAGATGAAGGTATTGGTAACCATCAAGAAGGAAAGTTGTCACACGGCAGAGGTGCTTTGCGTTCGAAGTGACTGCAAAGAAGGGCCTTACACACCCATCCCCAATGCTTACATTTACAAGGATACAGTCCAGGTGCAGCTGGATAGTTTAGAGCCTTGTATGTATGTGGCTGTTGTGGTTAAGGCACAGTACATTAGCCACAATACCACTGTTTGGGACCATGTGCAGAGGAAAGTAACGCTGGGTGTCTACGGTCCCAAGCACATTCACCCTTCCTTCAAAACAGTTGTGGCAATGTTTGGGCATGACTGTGCCCCCAATACATTGTTGGTAAATGAGGTGGGCCGGCAGGCTAACTCCACCCCGCCAGTGGCCCTCCAGCTGTGGGGGAAACACCAGTTTGTGCTGGGGTACCCTCAGGACCTCCAGGTGGGATTGTACTCCAACATGTCCAACTATCAGGTGAAGGCGAGCGAGGGTGCCGGGGTGATTCAGGGATTTCAGGTCAAACTGGGGAAAGTCAGCAGGCTCCTGTACATGATCACATCGCGTGACCCCAACAGCATCTCAGATTTTACTCTCAGGGTCCAAGTCAAGGATGCCCTTGACTGTATCCTCACCCAGTTTTGCGTCCAAACGCCATCACCGCCACCAAAGACCGAAGCGAGGATAATGGGCCAGAGGAGGTttctgaaaaagaaagaggTGGATAAGATTGTCCTCTCACCACTGGCTGTCACTTCCAAATACCCAAAGTTTCAGGACCGATGCATTACCATCCTTAAATTTGGCAAGTTGATCAAAACAGTGAATAGGCAGCACAAGAGTACTTATCTGTTGGAGTACAAAAAGGGGGATGTTATTGCTTTGCTCAGCGAGGACAAAATCAAACTGCGAGGGCAGCTGCGGACCAAAGAGTGGTTCATTGGATACTACCTGGGGAAGATAGGCCTTGTCCATGCCAAGAATGTTTTAGTTCTGGGTAAGGTCAAGCCTATTTATTGGTGTGGGCCGGACCTAACAACCACAATGCTGCTGGAGCAGATCCTGAAGCCTTGCAAATTTCTTACGTACATCTACGCAACAGTGAGGACGGTTTTAATGGAGAATGTGGGCAACTGGAGGGCATTTGCAGATGCCCTTGGGTATGGGAATTTGCCACTTAATTGTTTTTGCCGAACCGAACTGGACAATGAGCCGGAGAAGGTGGCGTCGGTTCTGGAGAAACTCAAAGAGGAGTGTACGAACATGGAGAACAAGGAGAGGAAGTCCTTCCAGAGGGAACTCATGATGGCGTTGCTGAAGATGGACTGCCAGGGTCTGGTTGCCAGACTGGTCCTGGATTTCGTCTTGCTGACCACGGCGGTGGAGGTGGCGTTCCGCTGGAGGGAACTGGCCGAGAAACTTGCTCGAGTGTCCAGACAGCAGATGGAGGCCTACGAGGCTCCGCACCGCGACAAGAACGGCCTGTTGGACAATGAGTCCATGTGGAAGCCAGCCTACGATTTCCTCCTGACGTGGGCCGCCCACGTCGGGGACAGCTACCGAGACGTGATCCAGGAGCTCCACCTCGGCCTGGACAAGATGAGGAACCCCATCACCAAGAGGTGGAAGCACCTGACGGGCACGCTAATCCTCGTCAACTGCCTCGATACGCTCCAAAGTGCTGCCTTCTGTCCCACGGGATACGGAGATTTCGCTGTGTGAACACTTTCGTGCACCTGGAGAACACATTCTGTTAAAAGTCTACGAGGGCTGTTGCGGTAACTGGTAGAGACCAGTCCGATACCAGTGTCGGAATAGTCTCCGATACGGTCTAAAATGCCGGTATGGGTATCGGAGAGTAccggagtttatgcaccgatccaataCCACATAGTTtagccctgaagaaaatctactttaaagtagttcatctatgttctttttccgtgaTGACTCActcaagttcaggtatcggaatcggtattgGGAAGGAAAAAATGGAATCGGACCATTTCTAGTTACTGGAGCCCAATACATGTGCAGAGTTTTGTCTTGGACGGTTGGACAAGCTTCTGTACGTCCTCTTGTTTGGAGTCTTGGACGGGCGTCATCGGTGGCAGCACCGATTGGTTTCCGTTAAGCGCCAGATGTACAAATGTTATTGCACGATTCTTGGCATTGAATAAGTCAATGTGAAACTGGAGgatctgcctctctctgtttttatGCCTTTTGTTAGGTTAGTCctgttttctctgtgttttttttttttacctccccCTTGGTCTTCCCTTTTAATTTTGCTCCAATTGatgacagtgtgtgtgaattGTTCTTTCCGTTTCCACATCTCCCTCAGGACAACATCAGAGACCTCGCCCACTGCAGTATACGTGACCACACGTACTGTGAACTTTGACCTGTCCGCCACCTTTAAAAGCTGTTTTTACCCCCCCTTTGTTTGCAAGCTAAATTTTTACACACAACGCAACTTTTCCCTCCATTCTTTCACTGCTTCTCACTGGCCGAAGAAGGCGGAGCTGATGTGttgtttaaatgaaattaatcaaaaaaataGTTTCATACATTCAAAACATTAAGAGCATTTCTCGGTCATGGTAACTTTACGTGTGACTCGCAAGATATACTTCTATTTTTTATACTTGCAGAACGATACAGGCGATGATATTATTGGCAGTGTTATTCTTGTGTACTGTACGCTTCAAGAGTTAGAACTTCAGAATCAAAATTACAACCGTGGTGTAAAATATGTACACTTGAGTTTTTAGCCGAACATCCAAAtctattttcctttttaaagcatGAAATCCTACATTTATTGTACATAAGTGCATCCAATATTTTCAAGATGTTAGACTGTTGCGCACACACGTTTTAATTTTTTCAGGGATTACGTATTTGATGAAGATAGACCTAAAATGATCATGATAATGTTAAAATTCCTGCTAAAGGTGCCAGTACAgcacattttttgcaagtttgcTATTTTTACTTTCTGACTTCTCCAACGCATAaatttcattattttcttgTGGTGCATTTTATTGGAGTGTTTTAACTTTGGGTTTTTTCAACTGCAATGCAATTCTATAGGACAAATGTGCATTGTCGACTTCGTCCACTAAAATTGCTTTATTTCTTGCAGATTAAtattataagtgtctgacaacattatggaaaggatccctacagagatagacctttttttaaagagtaaCATCCTCTTTGTTTAACCAAAAAAagctctgaggtcgctagcgctaaactcaccagactccattttaaaaaacagcacttttagtgtgtatagagccaacatattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319775 lncRNA upstream 30379 17742792 ~ 17745153 (+) True G235609
TU319786 lncRNA upstream 42752 17729469 ~ 17732780 (+) True G235619
TU319780 lncRNA upstream 48439 17722096 ~ 17727093 (+) True G235614
TU319752 lncRNA upstream 233371 17512726 ~ 17542161 (+) True G235589
TU319750 lncRNA upstream 265837 17509493 ~ 17509695 (+) True G235587
TU319792 lncRNA downstream 7962 17815715 ~ 17828471 (+) True G235625
TU319797 lncRNA downstream 29317 17837070 ~ 17838244 (+) True G235630
TU319883 lncRNA downstream 83837 17891590 ~ 17902611 (+) True G235703
TU319877 lncRNA downstream 127483 17935236 ~ 17938311 (+) False als2b
TU319878 lncRNA downstream 131341 17939094 ~ 17940272 (+) True G235699
XM_039793026.1 mRNA upstream 411467 17357447 ~ 17364065 (+) True LOC120554248
XM_039792945.1 mRNA upstream 432503 17340047 ~ 17343029 (+) True LOC120554209
XM_039792988.1 mRNA upstream 468594 17289184 ~ 17306938 (+) True LOC120554229
XM_039792948.1 mRNA upstream 507235 17234047 ~ 17268297 (+) True LOC120554211
XM_039793052.1 mRNA downstream 28141 17835894 ~ 17836902 (+) True LOC120554264
XM_039792923.1 mRNA downstream 74712 17882465 ~ 17935473 (+) True als2b
XM_039792924.1 mRNA downstream 74712 17882465 ~ 17935473 (+) False als2b
XM_039792925.1 mRNA downstream 74712 17882465 ~ 17935473 (+) False als2b
XM_039792926.1 mRNA downstream 74712 17882465 ~ 17935473 (+) False als2b
unassigned_transcript_1702 other upstream 670319 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 670891 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 701449 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 701807 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 702412 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 145386 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 359533 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 369072 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2189046 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2400576 20208329 ~ 20233795 (+) False prkx

Expression Profile