RNA id: XM_039792940.1


Basic Information

Item Value
RNA id XM_039792940.1
length 2825
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC120554204
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16981037 ~ 17000130 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGAAGTCGATCTCATCATCATCTGATCTGACCGTCAGAGACTCGACAGACAGAGCAACTTCTCTCCTTCATCTGAgcgTGACTTCAGTGAAACCTCCAGCCATCATGTCTCTATTAAAGGAGAAGTCACACCACCACAAGGGGCGCTACAACGGGAAGGTGTCGACCTCCAACCTTGGGCATTTTGGAGAAGATTTTCCAGAGTTTGAGCCTTTTCCTGACGCTCCCACACCCAGAGCACCTGCTGATGACGGCACGTATCTGTCGGTGCAGATGGTCGACATGTGTCAGCAGATGAACGAACCGCAACACAAGACGGCCTCCTACAACACCCCCAACCTGGTGGTCCGCCGCGGTCAGGAGTTCCTGGTGAGAGTCACCTTCAACCGCCCGCTGGCGCAGAGCGACGACTTCCAGCTCGAGTTCCTGATTGgtgAAAACCCTTCAGCCAGCAGGAGCTCCCTGGTGGTGGTGACCTTCAATTCCCGTCTCGGGGGCCCGTGGTCGGGTCGGCTTGTGCAGAGTCAGGGTGTAACTGTGACTCTGGGCATCACGCCGACGCCCAACGCCATCGTGGGAAAGTTTCGTACGTACGTGGCCATCGTAGCGGGCACCGGCATGCAGCGAACAGGGAGGGACGCCGCCACTGACCTGTACGTGCTGTTCAACGCCTGGTGTAAAGatgatgcgGTGTTTCTTCCTAATGAAGCTGAGCGGAACGAGTACGTCCTCAACGACCATGGTGTGATGTATCAGGGTGCAATTGAGGATTTGGCAACCTGTGACTGGGTTTATGGACAgTTTGAGCGCGGCATTTTGGACGCCTGTATTTACATCCTGGATGCGTCTCAGATGCCGATCAGCGACCGAGGCAAAATCATGAAAATGCTCAGGATGGGATCCGCAATGATTAACTCTAAGGACGATAATGGCGTGTGTGTTGGGAACTGGAGTGATGACTACTCAATGGGCAGGTCCCCGATGTCTTGGACGGGCAGCGTCCAGATCCTTCTGCAGTACGCCGAAACCGGAGTCCCGATCTCCTACGCCCAGTGCTGGGTATTTGCTGGAGTCTTCAACACCTTCTTACGCGCCTTCGGCATCCCGGCGAGGCCCGTCACCAACTTTGCTTCAGGTCACGACAGCAACGGCAACCTAAAGATCGAATTCATCCGCCCGCCTGATGGCTCGCCAGACGACAGCAACACCACGGACTCCATCTGGAACTACCACTGCTGGAACGAGGTGTTCATTAGGCGCGCCGACCTGCCGCCCGGCCTCGGAGGATGGCAGGCGGTGGACGCCACGCCCCAGGAGACCAGTGATGGATATTATCGCTGCGGTCCAGCTTCAATAAGCGCCGTCAAGCAAGGTTTGCTCTGTCACCCGTTTGATTCAGGGTTCGTCTTCGCTGAGGTGAACAGTGAGGTCGTCTTCTACAAGCTGGATCGCTACGGGACTCTGACTCCGTACTGGGTGTTAACGGATTACATCGGAAAGGATGTTTACACCAAATCTTTGGGGAGCAACTCACCAAACATCATCACACAGAACTACAAGTACCCtcaagGTAGTGAAGAGGACAACAGGACCATGGCCCGGGCAGATAACTACAGCATGGAGATGGATCAACCCGAGCTGCCTGAGACCACACTGTCTATCAGTATTAACGCCAGACAGGTCAAGCTCGGTCACAACGTCAACCTACAGGTGGATTTCCACAACCCCAGTGATGTCCCCAAAACCATCCGAGCCAACCTGGCCGGGTCCGTCATCTTCTACACCGGAGTCAAAGCCAGTCACTTGATAAATCACAACTTCACCATCACTGtgccagccaatcagataaAGAGTGAGATGGTGAAGATCACAGCTGATGAGTACATGCCATATTTGGGCACTCAGCGTTGCATGCAGTTTGTTGTGACTGGACAGACTGAGGACGAATCAGTGACCACCATCAAGGTGCTCCATCTGCAGATCCCGACGCTCACCGTGACGCTGAGTGGCTCGCCTCGGGTGCAGCATCAGATGTTTGCCAATGTTACCTTCACCAACCCCTTCAACTTCGCCCTGAAGGCCTGTAGGCTGGTCATGGAAGGAGCTGGACTCATGAGCGAGAAGACACGTCTCTACGGagtcATTGAGCCTCAGGCCTCGATCTCCTGTACAGAGTCTTTCAGCCCTCGGCTGGAGGGAAAGCGCTGCATTGTGGCGGTGATGGACTGCAGCAACCTCTGTGAGaTGAGGGGAGTTGCTTGCGTCGACATCACGCCCTGAGATGATTGGttcacagagctgtgtgacccCCGCCCCTCTCCATTTCCACAACGCCTCCCCCAATCACAGCAGCTTCAAAACTGAGTGGGCGGAGCCGACAAAGTACGCAAACCACGTCtttgatgattttatttcttgtttaaTTTCAACGTACCCAAATCCCAGGGAATTCCCAGCTTTGATATTTTTGCTCCACAGGTTGGCGcgacattttaaaatgagtttAGCTAGTTTAGTGAGGAAGCTCGAGGGTTAACGGTCATATAGAggaataataatacataattttTAATAGCTTTATTTGGCAAATAAGGATTTTGATTTTGTTCTTGGTAAAATGAGATTTAAGaagtaaaattattattaatcaatGCATTTTAATCAAACGTCTCAGAGAGTCTCCTCTCAGTCTGAGGTATAAAATCTGTTTAAtcatcattttaatgtttggaTGAAAACAAATTGTGTGTGATTGTACtgtagtctttttttctttcactgccGAACCTTTTCTACTAACAATAAAAGCATTTTCAAAACCA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319447 lncRNA upstream 45371 16934799 ~ 16935666 (+) True G235332
TU319439 lncRNA upstream 48453 16880639 ~ 16932584 (+) False LOC120554243
TU319436 lncRNA upstream 140208 16840186 ~ 16840829 (+) True G235321
TU319398 lncRNA upstream 386188 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 414993 16563427 ~ 16566044 (+) True LOC120554281
XR_005638359.1 lncRNA downstream 132986 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 183225 17183355 ~ 17204668 (+) True LOC120554285
TU319642 lncRNA downstream 312879 17313009 ~ 17313865 (+) True G235497
TU319646 lncRNA downstream 345335 17345465 ~ 17345923 (+) True G235501
TU319675 lncRNA downstream 349735 17349865 ~ 17350086 (+) True G235530
XM_039793018.1 mRNA upstream 48431 16917962 ~ 16932606 (+) False LOC120554243
XM_039793019.1 mRNA upstream 48431 16917962 ~ 16932606 (+) False LOC120554243
XM_039793017.1 mRNA upstream 48431 16917963 ~ 16932606 (+) True LOC120554243
XM_039793185.1 mRNA upstream 198801 16780004 ~ 16782236 (+) True LOC120554340
XM_039793014.1 mRNA upstream 229521 16734661 ~ 16751516 (+) True LOC120554241
XM_039793007.1 mRNA downstream 57558 17057688 ~ 17099481 (+) True LOC120554236
XM_039793038.1 mRNA downstream 113286 17113416 ~ 17124906 (+) True LOC120554254
XM_039792548.1 mRNA downstream 169255 17169385 ~ 17178813 (+) True LOC120553999
XM_039792949.1 mRNA downstream 221179 17221309 ~ 17268297 (+) False LOC120554211
XM_039792948.1 mRNA downstream 233917 17234047 ~ 17268297 (+) True LOC120554211
unassigned_transcript_1692 other upstream 29268 16951697 ~ 16951769 (+) True trnat-cgu_25
unassigned_transcript_1691 other upstream 30543 16950421 ~ 16950494 (+) True trnat-agu_63
unassigned_transcript_1683 other upstream 162360 16818604 ~ 16818677 (+) True trnat-agu_59
unassigned_transcript_1682 other upstream 194956 16786008 ~ 16786081 (+) True trnat-agu_58
unassigned_transcript_1681 other upstream 195551 16785414 ~ 16785486 (+) True trnat-ugu_44
unassigned_transcript_1693 other downstream 28859 17028989 ~ 17029062 (+) True trnat-agu_64
unassigned_transcript_1694 other downstream 29242 17029372 ~ 17029444 (+) True trnat-cgu_26
unassigned_transcript_1695 other downstream 52404 17052534 ~ 17052606 (+) True trnat-ugu_46
unassigned_transcript_1696 other downstream 54566 17054696 ~ 17054769 (+) True trnat-agu_65
unassigned_transcript_1697 other downstream 55176 17055306 ~ 17055378 (+) True trnat-cgu_27

Expression Profile