RNA id: XM_039792941.1


Basic Information

Item Value
RNA id XM_039792941.1
length 3008
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC120554205
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17185387 ~ 17208313 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTGAAGTCGATCTCATCATCATCTGATCTGACCGTCAGAGACTCGACAGACAGACCAACTTCTCTCCTTCATCTGAgcgTGACTTCAGTGAAACCTCCAGCCATCATGTCTCTATCAAAGGAGAAGTCACACCACCACAAGGGGCGCTACAACGGGAAGGTGCCGACCTCCAACCTTGGGCCTTTTATAGGAGATTTTCGAGAGTTTGAGGCTTTTTCTGACGCTCCCACAGCCAGAGCATCTGCACCTGATGGCACGTATCTGTCGGTGCAGATGGTCGACACGTGTCAGCAGATAAACAAACCACAACACAAGACGGCCTCCTACCACACCCCCAACCTGGTGGTCCGCCGCGGTCAGGAGTTCCTGGTGAGAGTCACCTTCAACCGCCCGCTGGCGCAGAGCGACGACTTCCAGCTCGAGTTCCTGATTGgtgAAAACCCTTCAGGCAGCAGGAGCTCCCTGGTGGTGGTAACCTTCAATTCCCGTCTTGGAGGCCCGTGGTCGGGTCGGATTGTGGAGAGTCAGGGTGTAACTGTGACTCTGGGCATCACGCCGACGCCCGACGCCATCGTGGGAAAGTTTCGTACGTACGTGGCCATCGTAGCGGGCACCGGCATGCAGCGAACAGGGAGGGACGCCGCCACCGACCTGTACGTGCTGTTCAACGCCTGGTGTAAAGatgatgcgGTGTTTCTTCCTAATGAAGCAGAGCGGAACGAGTACGTTCTCAACGACCATGGTGTGATGTATCAGGGTTCATTTGATGCTGTGACAACCCATGACTGGGTTTATGGACAgTTTGAGCGCGGCATTTTGGACGCCTGTATTTACATCCTGGATGCGTCTCAGATGCCGATCAGCGACCGAGGCAACATCATCAAAGTGATCAGGATGGGATCCGCAATGaTTAACTCTAAGGACGATAATGGCGTGTGTGTTGGGAACTGGAGTGATGACTACTCAATGGGCAGGTCCCCGACGTCTTGGACAGGCAGCGTCCAGATCCTTCTGCAGTACGCCAAAACCGGAGTCCCGGTCTGCTACGCCCAGTGCTGGGTATTTGCTGGAGTCTTCAACACCTTCCTACGTGCCCTCGGCATCCCGGCGAGGACAATCACCAACTTCTTTTCAGCTCACGACAACAACGGCGACCTGACGACCGCAATCATCCGCCTGCCTGATGGTTCGCCGGACGACAGCAACACCATGGACTCCATCTGGAACTACCACTGCTGGAACGAGGTGTTCATTAGGCGCGCCGACCTGCCGCCCGGCCTCGGAGGATGGCAGGTGGTGGACGCCACGCCCCAGGAGACCAGTGATGGATATTATCGCTGCGGTCCAGCTTCAATTATCGGCATCAAGGAAGGTTTGCTCTGTCACCCGTTTGATTCAGGGTTCGTCTTCGCTGAGGTGAACAGTGACGTTGTCTTCAACAAGCTGGATCGCTACGGGACTCTGACTCCGTACTGGGTGGAAACGGATTACATCGGAAAGGCTGTTTACACCAAATCTTTGGGCAGCAACTCACCGAACAACATCACACAGAACTACAAGTACCTtaaagGTAGTGAAGAGGACAACAGGACCATGGCCCGGGCGGAGGCATACGACATTGAGAGGCATCATTCCGAGCTGCCTGAGACCACACTGTCTGTCATTATTACCGTAGGACAGGTCAACCTGGGTCAGGACGTCAACCTACAGGTGGATTTCCACAACCCCAGTGATGTCCCCAAAACCATCCAAGCCAACCTGGCCGGGTCCGTCATCTTCTACACCGGAGTCAGAGCCAGTCACTTGATAAATCACAACTTCACCATCACTGtgccagccaatcagatgaaGAGTGCGATGGTGAAGATCACAGCTGATGAGTACATGCCATATTTGGGCACTCAGCGTTGCATGCACTTTGTTGTGACTGGACAGACTGAGGACGAATCAGTGAGCACCATCAAGGTGCTCCATCTGCAGATCCCGACGCTCACCGTGACGCTGAGTGGCTTGCCTCGGGTGCAGCATCAGATGTTTGCCAATGTTACCTTCACCAACCCCTTCAACTTCGCCCTGAAGGCCTGTAGGCTGGTCATGGAAGGAGCTGGACTCATGAGCGAGAAGACACATCTCTACGGagtcATTGAGCCTCAGGCCTCGATCTCATGGACGGAGTCGTTCAACCCTCGGCTGGAGGGAAAGCGCTGCATTGTGGCGGTGATGGACTGCAGCAACCTCTGTCAGGTGAGGGGAGTTGCTTGCGTCGACATCACGCCCTGAGATGATTGGttcacagagctgtgtgacccCCCCGCCCCTCTCCATTTCCACCACGCCTCCACCAATCATAGCAGCTTCAAAACTGAGTGGGCGGAGCCGACAAACCAGAGCAAACCACGTCtttgatgattttatttcttgtttgACTTCAATGTACCCAAATCCCAGGGAATTCCGAGCTTTGATATTTGGCGcgacattttaaaatgagtttAGCTAGTTTAGTGAGGAAGCTCACATAGAGGAATAATAATAGATCCTTTTTAATAGCTGCGTTGGGCAAATTTGAGGCTTTCTAAAATGAGATTTGAGAACTAAAGTATGAGCAGATAACTGAGTTAGTCACCGCTGGATCAGTTTGGCAGCAGCTCTCCTCCATCACATCTCCGCTCGGGCATGAATTGAAATATTAATCATTAcgctttttaataaataaatgtctcaGAGAGTCTCCTCTCAGTCTGGGACATGACATCtgtttaaagtgactatatgtaaatttttaatgtttctgaagctCTGTCCTTTTTCATACAACAGTCTTCATTGACCTGTAACCGCAAACGAGCCCAACAGTAAAAAGAACGCTAATTTCTATGTTTTTTACCACATAAtcatcattttaatgtttggaTGAAAATTTTTTTGGGTGAttgtagtcttttttttttttttcctttcactgCTGAACCTTTCCTACCAACAATAAAGCATTTTCAAAACCA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319609 lncRNA downstream 9427 17175622 ~ 17175960 (-) True G235471
XR_005638338.1 lncRNA downstream 268688 16913598 ~ 16916699 (-) True LOC120554268
TU319562 lncRNA downstream 269237 16876009 ~ 16916150 (-) False LOC120554268
TU319560 lncRNA downstream 308533 16873835 ~ 16876854 (-) True G235427
TU319545 lncRNA downstream 409842 16766666 ~ 16775545 (-) True G235413
TU319657 lncRNA upstream 57947 17266260 ~ 17330177 (-) True G235512
TU319689 lncRNA upstream 156887 17365200 ~ 17365435 (-) True G235542
TU319728 lncRNA upstream 203673 17411986 ~ 17413880 (-) True G235571
TU319802 lncRNA upstream 304304 17512617 ~ 17544436 (-) True G235635
XR_005638357.1 lncRNA upstream 480657 17688970 ~ 17707496 (-) True LOC120554284
XM_039792990.1 mRNA downstream 25192 17143971 ~ 17160195 (-) True LOC120554231
XM_039792991.1 mRNA downstream 158656 17016204 ~ 17026731 (-) True LOC120554233
XM_039792547.1 mRNA downstream 280858 16885309 ~ 16904529 (-) True LOC120553998
XM_039792952.1 mRNA downstream 331254 16824657 ~ 16854133 (-) True LOC120554212
XM_039793051.1 mRNA downstream 443099 16736186 ~ 16742288 (-) False LOC120554263
XM_039792979.1 mRNA upstream 9878 17218191 ~ 17234702 (-) True LOC120554225
XM_039793020.1 mRNA upstream 70041 17278354 ~ 17285312 (-) True LOC120554244
XM_039792958.1 mRNA upstream 182324 17390637 ~ 17432254 (-) True LOC120554214
XM_039792959.1 mRNA upstream 182325 17390638 ~ 17432254 (-) False LOC120554214
XM_039792981.1 mRNA upstream 232083 17440396 ~ 17473159 (-) False nab1b
TU319472 other downstream 81870 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 276969 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 277565 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 277902 16907413 ~ 16907485 (-) True trnat-cgu_23
unassigned_transcript_1687 other downstream 312273 16873041 ~ 16873114 (-) True trnat-agu_61
TU319844 other upstream 526418 17734731 ~ 17745200 (-) False s100b
TU320378 other upstream 2523006 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 3159028 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 3518090 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 3518217 20726530 ~ 20728427 (-) False G236340

Expression Profile