RNA id: XM_039792942.1


Basic Information

Item Value
RNA id XM_039792942.1
length 2762
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC120554206
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16616703 ~ 16638195 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTGAAGTCGATCTCATCATCATCTGATCTGACCATCAGAGACTCGACAGACAGACCAACTCCTCTCCTTCATCTGAgtgTGACTTCAGTGAAACTTCCGACCATCATGTTTCTATCAAAGGGGGAGTCAAACAACTACAAGGGGCGCTACATTGAGCAGGTGTCGACCTCCAACTTTGGGCAATTAGAAGAAGATTTTCCAGAGTTTGAGCCTTTTCCTGACGCTCCCACAGCCAGAGCACCTGTTGATGATGGCACATACCTGTCGGTGCAGAATGTCGACATGTGTCAGCAGATAAACAAAACGCAACACAACACGGACGCCTTCGACACCCCCAACCTGGTGGTCCGCCGCGGTCAGCAGTTCCTGGTGAGAGTCACCTTCAACCGCCCGCTGGTGCAGAGCGACGACTTCCAGCTCGAGTTCCTAATTGgtgGAAACCCTTCGGCCAGTAGGGGCTCCCTGGTGGTGGTAACCTTCAATTCCCGTCTTGGAGGCCCGTGGTTGGGTCGGATTGTGCAGAGTCAGGGTGTAACTGTGACTCTGGGCATCACACCGACGCCCGATGCCATCGTTGGGAGATTTCGTATGTACGTGGCCATCGTGGCGGGCACCGGCATGCAGCGAATCAAGAGGGACGGTGCCACCGACCTGTACGTGCTGTTCAACGCCTGGTGTAAAGatgatgcgGTGTTTCTTCCTAATGAAGCAGAGCGGAACGAGTACGTCCTCAACGACCATGGCGTGATGTATCAGGGTTCATTTGATGCTGTGACAACCCGTGACTGGGTTTATGGACAGTTTGAGCGCGGCATTTTAGATGCCTGTATTTACATCCTGGATGCGTCTCGGATGCCGATCAATGACCGAGGCAACATCATCAAAACGGTTAGGATGGGATCCGCAATGATTAATGCTCAGGACGATAATGGCGTGTGTGTCGGGAACTGGAGTGACAACTACTCGATGGGCAGGCCCCCGACATCTTGGACGGGCAGCGTCCAGATCCTTCTGCAGTATACCAAAACCGGACACCCGGTCGGCTACGCCCAGTGCTGGGTGTTTGCTGGAGTCTTGAACACCTTCCTACGCACCCTCGGCATCCCAGCACGGCCCATCACCAACTTTGTTTCAGCTCACGACAACAACGGCAACCTGAAGACCGACCTCATCTGCCTGCCTAATGGCTTGCCGGACTACACCAACACCAAGGACTGCATCTGGAACTACCACTGCTGGAACGAGGTGTTCATTAGGCGCGACGACCTGCCGCCCGGCCTCGGAGGATGGCAGGTGGTGGACGCCACGCCCCAGGAGACCAGTGATGGATATTATCGCTGCGGTCCAGCGTCAGTTATCGGCATCAAGGAAGGTTTGATCTGTCACCCGTATGACCCAGGGTTCGTCTTCTCTGAGGTGAACAGTGACGTCGTCTTCTACAAGCGGGATCGCTACGGGACTCTGACTCCGTACAAGGTGGAAACGGATTACATCGGAAAGGCTGTTTACACCAAATCTTTGGGCAGCAACTCACCGAACAACATCACACAGAACTACAAGTACCCTCAAgGTAGTGCAGAGGACAACAGGACTATGGCCCGGTCGGAGGAATACGGCGTTAAAAGGCATCACTCCGAGCTGCCCAAGACCACACTGTCTATCATTATTAACGCCAGACAGgTCAACCTGGGTCAGGACGTCAACCTACAGGTGGATTTCAACAACCACAGTAATTTCCCCAAAATCATCCAAGCCAACCTGGCTTTTTCCGTCATCTTCTACACCGGAGTCAGAGCCAGTCACTTGAAATATCACAACATCACAATCACTGTGCCGGCCAATCAACtgaaGAGGGAGATGGTGAATATCACAGCTGATGAGTATATGCCATATTTGGGCACTCAGCGCTGCCTGCAATTTGTTTTGACTGGTCAGACTGAGGACGAATCAGTGACCGCCATCAAGGTGCTCGAGCTGCAGATCCCGACGCTCACCGTGACGCTGAGTGGCTTGCCTCGGGTGCAGCAGGAGATGTTTGCCAACGTTACCTTCACCAACCCCTTCATCTTTGCCCTGAAGGCCTGTAGGCTGTCCATGGAAGGAGCTGGAGTCATGAGCGAGAAGACCCGTTTCTacgaAGTCATTGAGCCTCAGGCTTCGATCTCCTGGACGGAGTCGTTCAACCCTCGGCTGGACGGAAAGCGCTGCATTGTGGCGGTGATGGACTGCAGCAACCTCTGTCAGgtgAGGGGAGTTGCTTGGGTCGACATCATGCCCTGAGATGATTGGttcacagagctgtgtgacccCCGCCCCTCGCCATGTCCACTACGacctccaccaatcacagcagctTCAAAACGGAGTGGGCGGAGCCAACAAACCAGAGCAAACCACGtcttttatgattttatttctcGTTTGACTTCAATGTACACAAATCACAGGGAAGCTTTGATATTTAAAATAAGTTTAGCTAATTTAGTGGGGAAGCTCGAGGGCTAAAGGTAATATAGAGGAATAATAACAGATCATTTTTAATAGCTTTATTGGGCAAATTTGAGGATTGTTTTTCTTTCCAAAATGAGATTTGAGAACTAAAGTATGAGCAGATAACTGAGTTAGTCACCGCTGGACCAGTTTGGCAGCAGCTCTCCTCCATCACATCTCCGCTCTGGAATGAGTTGACATATTAATCATTACTTTCTTTTTCATCTGCCGAACCTTTTCTATTAACAATAAAAGCATTTTCAAAACCA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319516 lncRNA downstream 2992 16611983 ~ 16613711 (-) True G235387
XR_005638345.1 lncRNA downstream 49612 16562804 ~ 16567091 (-) False LOC120554273
XR_005638344.1 lncRNA downstream 49687 16562804 ~ 16567016 (-) True LOC120554273
TU319509 lncRNA downstream 49688 16562814 ~ 16567015 (-) False LOC120554273
XR_005638360.1 lncRNA downstream 110072 16505591 ~ 16506631 (-) True LOC120554287
TU319479 lncRNA upstream 43532 16681727 ~ 16711192 (-) True G235357
TU319545 lncRNA upstream 128471 16766666 ~ 16775545 (-) True G235413
TU319560 lncRNA upstream 235640 16873835 ~ 16876854 (-) True G235427
TU319562 lncRNA upstream 237814 16876009 ~ 16916150 (-) False LOC120554268
XR_005638338.1 lncRNA upstream 275403 16913598 ~ 16916699 (-) True LOC120554268
XM_039792978.1 mRNA downstream 60248 16531962 ~ 16556455 (-) False LOC120554223
XM_039792976.1 mRNA downstream 60248 16531962 ~ 16556455 (-) False LOC120554223
XM_039792975.1 mRNA downstream 60248 16531962 ~ 16556455 (-) True LOC120554223
XM_039792957.1 mRNA downstream 184271 16410760 ~ 16432432 (-) False LOC120554212
XM_039792953.1 mRNA downstream 184271 16410760 ~ 16432432 (-) False LOC120554212
XM_039793051.1 mRNA upstream 97991 16736186 ~ 16742288 (-) False LOC120554263
XM_039793050.1 mRNA upstream 101474 16739669 ~ 16742288 (-) False LOC120554263
XM_039792952.1 mRNA upstream 186462 16824657 ~ 16854133 (-) True LOC120554212
XM_039792547.1 mRNA upstream 247114 16885309 ~ 16904529 (-) True LOC120553998
XM_039792991.1 mRNA upstream 378009 17016204 ~ 17026731 (-) True LOC120554233
TU319517 other downstream 387 16611983 ~ 16616316 (-) False G235387
unassigned_transcript_1647 other downstream 111773 16504858 ~ 16504930 (-) True trnat-cgu_16
unassigned_transcript_1645 other downstream 116173 16500458 ~ 16500530 (-) True trnam-cau_66
unassigned_transcript_1644 other downstream 160242 16456388 ~ 16456461 (-) True trnat-agu_41
unassigned_transcript_1643 other downstream 229858 16386772 ~ 16386845 (-) True trnat-agu_40
unassigned_transcript_1673 other upstream 90239 16728434 ~ 16728507 (-) True trnat-agu_55
XR_005638337.1 other upstream 97991 16736186 ~ 16742288 (-) True LOC120554263
unassigned_transcript_1675 other upstream 117798 16755993 ~ 16756065 (-) True trnat-cgu_19
unassigned_transcript_1684 other upstream 225682 16863877 ~ 16863949 (-) True trnat-ugu_45
unassigned_transcript_1685 other upstream 226238 16864433 ~ 16864506 (-) True trnat-agu_60

Expression Profile