RNA id: XM_039792949.1


Basic Information

Item Value
RNA id XM_039792949.1
length 2907
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120554211
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17221309 ~ 17268297 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTGGGTCCTCCTGGTCCAGACTGGAGCTCCACTCGTGCTGCTGTTCTTCACCAACGATCACTTTCTGGATATCTGAAGaTTTGATTCTACCCCCCTCTCCAACCAGACTTCAGACCTGTCAGTGACTCTCAAACTTTTCTTCTGGCCACTGCGGACCACCTCATCCCCTCTCAGGGCTTCAGAGACATCAGCATCCACCCCACACCCCCAAGTAAACTCGGTCCGGAGAGAGGAGGGCAGAGGAGTGTAGCggaagttgtgtttgtgtttccggGTCCCGGAAGATGCTGCGACCTCTGTCCCATTGTTGTGTATTTCACTGCGTGATGAGGACGGCGGAGTAAAAGACGCCGGTGTTTGGTGCCCTAAAGAGAGAAACGTCACCAACTCCTGGACGTGGTGAAACGGAGCTCCAAAGAGCAgCTTGGGGAGAAGTTGATGAGAGACACTTCAACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACAAagcccccacacattaaagaggaacaggaggaactccGGATCAGTCAGGATgaagagcagcttcaagggctggaggaggctgatatcaagTTCCCAATAACTCCTGTCCTTGTGAAGACTGAAGACGATGAAGAGAAACCAGAGttctcacagcttcatcaaagacaaactgaagagataaaaacagaagctgatggagaggactgtggaggaccagaaccagacaTGAACTCGGATCCAGATACACATTTACAACCAGCTGCTGATGACtgttctgaacctgagactgatgacagtaaTGATTGGAGGGAGACCAGAGAAACTCAGTCAGGTTTGAACTCTCTGAATAACAAAGTCTCTGATCCGAGATGTACCGGTGAcaaaccatttagctgctctaAATGTGGGAAACAATTCAGCACCAACGGACATCTGAAGAGGCACATGAGATCTcatacaggagagaaaccattttGCTGCTCTGTCTGCCagaaatattttaaacaaaGTGAACATTTACAGACGCACATGAAAATCCACACGGGAGAGAAACAATTTAGCTGCTCActctgtaagaaagcttttatAGTGAGAGGAAATCTACggaaacacatgagaatccacacaggagagaaaccgtttagctgctcagtctgtagaAAAGCTTTTACAGTGAGTGGgaatttacagaaacacatgaggatccacacaggagagaggccgtttagctgctcagtctgtaagaaagcttttagAGAAAGTGgacatttacagaaacacatgagaatccacacaggagagaaaccattttGTCGTGTGGAGTCGAGCTCCGGTCTGGAAgCTTTTCCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGCGCTCCAGTCTGGACCGGGAGGACACAAAGCCCCCCCACattaaagaagaacaggaggaACTCCAGACCAgccaggagggagagcagcttcaagggctggaggaggccgaTATCatcaagttcccattcactctggtccctgtgaagagtgaaggtGATGAAGAGAAAACTCAGTCCTCGCATCAAAGACAAACCGAACAAATGAAAACAgtagctgatggagaggacagtGGAGGACCAGAGCCAGCCAGGAACTCGGATCCAGATGCACATTTGCAACCAGATACCTACAAGACTGGGTACTCTGcagaacctgagactgatgactgGAAGAAGGCCAGAGTAACTCAGTCTggtttaaactctctgaatagCAAAGTCTCGGTCTTTGATCTGAGATGTACTGGTGAGAAACCTTTTGGCTGCTCTAAAtgtgggaaaagatttggcATAAATGGACATTTGAAGAGGCACATGAGatctcacacaggagagaaaccatatAGCTGCTCCGTCTGCAAGAAATATTTTAAACAGAGTGGGCATCTACAGACGCACATGAAAATCCACACGGGAGAGAAACaatttagctgctcagtctgtaagaaagcttttacagCGAGTGGAAATTTACATAGACACATGAGaacccacacaggagagaaaccgttTAGCTgttcagtctgtaagaaagcttttacagGGAGTGGTAATTTACAGAAACACGTGAggatccacacaggagaaaaaccatttagctgctcagtctgtatgAAAGCTTTTAGAGAGAGTGgacatttacagaaacacatgagaacCCACACAGTAGAGAAACCATTTAGCCGTTTGGAGTGGAGCCCCAGTCTGGAAGGTAAAAATGAATAAGTCTCTAGAAGTGATCTGACATCAGTGGGTCCTTAACTAGTCTATAATCcaataattataattttaatCTTTGAATTGTCTTAAAAATGATTTTGATAGCCCATAAAAATGGATTTGGATTACGacggtaacgttactgttgtgaaATTGCGTTATATTCAGTGaatcattttatatttatattgggGCGGGGGGGGGTTATGTTGCTCCATGATGTAACAGAATTATCGAAACAAAACCATCATGGAACCAATGTCCACTAATGCAAACTTTGCAACCAGGTCAGAATTAATCGCAGCACACCCGGCTTGTGTGACACAATGTGGTGTGTGGGCTAATGTTGTATCTCCTGGattattttgtgcatgtgtgaaattGTTTCTGTTAATGTTCCTTTCATCGAATGGGGCTAAGTGCAATTTCAATGAGATCTGGCTCGAGAATGGAGCACATTGTACTTggttaaacgtacaatatgtaactttctgccgctaggggtctctcaaccaaaacaatggacggtaaaactggacttttgatgacgttgtgaagttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638358.1 lncRNA upstream 16641 17183355 ~ 17204668 (+) True LOC120554285
XR_005638359.1 lncRNA upstream 74817 17133116 ~ 17146492 (+) True LOC120554286
TU319447 lncRNA upstream 285643 16934799 ~ 16935666 (+) True G235332
TU319439 lncRNA upstream 288725 16880639 ~ 16932584 (+) False LOC120554243
TU319436 lncRNA upstream 380480 16840186 ~ 16840829 (+) True G235321
TU319642 lncRNA downstream 44712 17313009 ~ 17313865 (+) True G235497
TU319646 lncRNA downstream 77168 17345465 ~ 17345923 (+) True G235501
TU319675 lncRNA downstream 81568 17349865 ~ 17350086 (+) True G235530
TU319694 lncRNA downstream 112608 17380905 ~ 17381200 (+) True G235547
TU319695 lncRNA downstream 114558 17382855 ~ 17383085 (+) True G235548
XM_039792548.1 mRNA upstream 42496 17169385 ~ 17178813 (+) True LOC120553999
XM_039793038.1 mRNA upstream 96403 17113416 ~ 17124906 (+) True LOC120554254
XM_039793007.1 mRNA upstream 121828 17057688 ~ 17099481 (+) True LOC120554236
XM_039792940.1 mRNA upstream 221179 16981037 ~ 17000130 (+) True LOC120554204
XM_039793019.1 mRNA upstream 288703 16917962 ~ 16932606 (+) False LOC120554243
XM_039792988.1 mRNA downstream 20887 17289184 ~ 17306938 (+) True LOC120554229
XM_039792945.1 mRNA downstream 71750 17340047 ~ 17343029 (+) True LOC120554209
XM_039793026.1 mRNA downstream 89150 17357447 ~ 17364065 (+) True LOC120554248
XM_039792931.1 mRNA downstream 507235 17775532 ~ 17807753 (+) True LOC120554200
XM_039793052.1 mRNA downstream 567597 17835894 ~ 17836902 (+) True LOC120554264
unassigned_transcript_1702 other upstream 116096 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 116668 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 147226 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 147584 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 148189 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 684842 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 898989 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 908528 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2728502 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2940032 20208329 ~ 20233795 (+) False prkx

Expression Profile