RNA id: XM_039792952.1


Basic Information

Item Value
RNA id XM_039792952.1
length 3396
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC120554212
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16410760 ~ 16854135 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcactcaggcgCTTGGACTTGTGGAGTTGCTGTTAactacgaaattgtaagttataaagctttttgcagctaagatggctaggaatagtagaagctaatgttgcaagaggtttgtgtgtgccgCTGTTATCatgttagattgaattgtagtaggactcaactgaaccgGGTTAATGATGCTAGAGACTCGTGATTCGTGAGGCAATTTAAAGACTCGggttaaagatccgagtgaatcaCAACTCGAACAGGTCTAGTCCCATTGTTTGCATTTTAGCGCGTGATGAGGAGGCGGAGTAAAAGGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgGTCGGGGAGAAGTTGAGGAGAGACACTTCAACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGCTTTGCCTACAGATGTCCAGAAAGTGATTGTTGGCGACAAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACAAAGCCCCCCAACattaaagaagaacaggaggaACTCTGGATCAGTCAGGATgaagagcagcttcaagggctggaggaggctgatatcaccaagtttaCATTcgctcctgtccctgtgaagagtgaagatgatgaagagaaacCTGAGttctcacagcttcatcaaagacaaactgaagagataaaaacagaagctgatggagaggacggTGGAGGACCAGAAACAGCCATGAACTCAGAAACCGATACTGATGAcgagactggagactcttctgaacctgagactgatgacagtgctgattggaaggaaaccagagaacctcagtcaggtttaaactctctgaataaTGATAGATTCCCTGTTAGTGATTCAGGATGTACTACTGATGAGAAAGcatttagctgctctgagtgtgggaaaagatttggcACCAGTATGAATCTAAAgagacacatgagaactcatacaagagagaaaccatttagctgctcagtctgtaagaaatattttacagagAGTGGACATTTACAGGGACACATGAggatccacacaggagaaaaaccatttagctgctcagtctgtaagaaatattttacacagagtggacatttacagagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaatattttacagagAGTGGACATTTACAGGGACACATGAggatccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacagAGAGTGGACATTTACAtagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagatTTTATAGAGGGTGGAAGTTTAAagagacacatgagaatccacacaggagagaaaccattcagctgctcagtctgtaagaaagcttttaaAGGGAGTGGAAATTtacagagacacatgagaactcatacaagagagaaaccatttagctgctcagtctgtaagaaagcttttacagAGAGTGGACAATTACAGatacacatgagaatccacacaggagagaaaccattaAGCTGCTCAATCTGTAAGAAAGATTTTGCAGAGAGTGGACATTTACAGAGACACATGAGACTCCACACGGGAAAtaaaccatttagctgctcagtctgtaagaaatatTTGAAAGGGAGTGGACATTtacagagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacagagagtggacatttacagagacacatgagaatccacacggGAGAGAAACAAtctagctgctcagtctgtaagaaatatTTGAAAGGGAGTGGACAGTTAGagagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacagagagtggacatttacagagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagatATTGTAGATAGTGGAAGTTTAAAGatacacatgagaatccacacaggagagaaaccattcagctgctcagtctgtaagaaagcttttacagTCAGTGGACAATTACGgagacacatgagaatccacacaggagagaaaccatattgctgctcagtctgtaagaaagcttttacagCAAGTGGAagtttacagaaacacatgagaacCCAACACAAGAGTGTTACAAGCTCCCCCCTTGTTTAGCTTCTCCCTGTCTGCTCTACTCAGGTGATCCTGATTTGATCGTTAGTGGTTGGCTCCGCCCCCTGTACTTAAGGAAGGCTGGAGGACTCTTTCAGACTGAAGTAGCTGTTCACTAGTGTGTTTATTATTGGTGGGATTGAGGTCTGAGGGGTATGGCACAAAACCAAGCTATTTGTAACTAAACTCATGATTTTTGGATATTGTACTATAAATACAGACGTATAAATAGTAATTGACAATGAAATAACTGAAAGATGAATTTCTGGGTGTTTTACTTGACCACAAACTGTGCTGGATGTCCCAcattaaatatctttgcatgAAGTTGGCCAGGAGTATTGCTATATTGAACAAAACTGGGTACATATTGAACTATTATACACTACATACTCTGTACTACATGCTTATTTTACCATATTTGATAAACCTTATTTGTAAATTTTGTATGCTGTATTTGCATATctatttgttttgtaatatttgtttattgtagTATTAAGTAGTGGAGGTCCTAATAAGCTGCATGCTTCCGCCTGCTCCTTCTCGATTTTTTACACTTGGTTAATTCTTACTGTTTTAATTTTGtgctgttttcttttgcaaTATTGTTGATTTTTCttgaaactgtttttttttgtgtaaataatTAGCCTAACTCCTTAAATGGTTTcatttaagagcagtagttcgtaGATGTATATTAGATATTATATTAGatatatcattcagtcggtctgcTTCTGCcacgtttttttctcacttttttttgtttttgttttttacagaggCAGTTTCCTTCTCTATTTATTGTACGCTTTGCTTCCTAGTAGGCCTATATAGACATAGAAAAGGAAGACTCTAACCAATAAAAGCTAACGTGGCAGCATGGTGGCttagtggttagcacttctacctcacagcaagaaggttctgggttcaaaCCCAGGTCATcacaggcctttctgtgtgtttctatgttctgcttgcgtgggtttcctccaggtgctctggtttcttGAAAATTAGCTGACTGCCTAACACTGgtgcattaatgtgcattgtcctaatcaaataaataaatgtataaactaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319545 lncRNA downstream 49112 16766666 ~ 16775545 (-) True G235413
TU319479 lncRNA downstream 113465 16681727 ~ 16711192 (-) True G235357
TU319516 lncRNA downstream 210946 16611983 ~ 16613711 (-) True G235387
XR_005638345.1 lncRNA downstream 257566 16562804 ~ 16567091 (-) False LOC120554273
TU319560 lncRNA upstream 19702 16873835 ~ 16876854 (-) True G235427
TU319562 lncRNA upstream 21876 16876009 ~ 16916150 (-) False LOC120554268
XR_005638338.1 lncRNA upstream 59465 16913598 ~ 16916699 (-) True LOC120554268
TU319609 lncRNA upstream 321489 17175622 ~ 17175960 (-) True G235471
TU319657 lncRNA upstream 412127 17266260 ~ 17330177 (-) True G235512
XM_039793051.1 mRNA downstream 82369 16736186 ~ 16742288 (-) False LOC120554263
XM_039793050.1 mRNA downstream 82369 16739669 ~ 16742288 (-) False LOC120554263
XM_039792942.1 mRNA downstream 186462 16616703 ~ 16638195 (-) True LOC120554206
XM_039792978.1 mRNA downstream 268202 16531962 ~ 16556455 (-) False LOC120554223
XM_039792976.1 mRNA downstream 268202 16531962 ~ 16556455 (-) False LOC120554223
XM_039792547.1 mRNA upstream 31176 16885309 ~ 16904529 (-) True LOC120553998
XM_039792991.1 mRNA upstream 162071 17016204 ~ 17026731 (-) True LOC120554233
XM_039792990.1 mRNA upstream 289838 17143971 ~ 17160195 (-) True LOC120554231
XM_039792941.1 mRNA upstream 331254 17185387 ~ 17208313 (-) True LOC120554205
XM_039792979.1 mRNA upstream 364058 17218191 ~ 17234702 (-) True LOC120554225
unassigned_transcript_1675 other downstream 68592 16755993 ~ 16756065 (-) True trnat-cgu_19
XR_005638337.1 other downstream 82369 16736186 ~ 16742288 (-) True LOC120554263
unassigned_transcript_1673 other downstream 96150 16728434 ~ 16728507 (-) True trnat-agu_55
TU319517 other downstream 208341 16611983 ~ 16616316 (-) False G235387
unassigned_transcript_1647 other downstream 319727 16504858 ~ 16504930 (-) True trnat-cgu_16
unassigned_transcript_1684 other upstream 9744 16863877 ~ 16863949 (-) True trnat-ugu_45
unassigned_transcript_1685 other upstream 10300 16864433 ~ 16864506 (-) True trnat-agu_60
unassigned_transcript_1686 other upstream 17723 16871856 ~ 16871928 (-) True trnat-cgu_22
unassigned_transcript_1687 other upstream 18908 16873041 ~ 16873114 (-) True trnat-agu_61
unassigned_transcript_1688 other upstream 53280 16907413 ~ 16907485 (-) True trnat-cgu_23

Expression Profile