RNA id: XM_039792956.1


Basic Information

Item Value
RNA id XM_039792956.1
length 3068
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120554212
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16410760 ~ 16854135 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctcactcaggcgCTTGGACTTGTGGAGTTGCTGTTAactacgaaattgtaagttataaagctttttgcagctaagatggctaggaatagtagaagctaatgttgcaagaggtttgtgtgtgccgCTGTTATCatgttagattgaattgtagtaggactcaactgaaccgGGTTAATGATGCTAGAGACTCGTGATTCGTGAGGCAATTTAAAGACTCGggttaaagatccgagtgaatcaCAACTCGAACAGGTCTAGTCCCATTGTTTGCATTTTAGCGCGTGATGAGGAGGCGGAGTAAAAGGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgGTCGGGGAGAAGTTGAGGAGAGACACTTCAACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGcttTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACAAagcccccacacattaaagacgAACAGGAGGAGCTCCGGATCAGTCAGGATGAAGAGCCGCTTCAatggctggaggaggctgatgtcaccaagttcccattcactcctgtccctgtgaagagagAAGATGAAGAGAAACCTCAGTTGTCACAGCTTTTTCAAAGACAAACTGAACAGATGAAAagagaagctgatggagaggactgtggaggaccagaaccagccatgAAATTAGATCTAGATACACATTTAGAACTAGCTACTGATGACGAGACTGGAGattcttctgaacctgagactgatgccagtgctgattggaaggagactagagaacctcagtcaggtttaaactctctgaataaTGATGAAGTCCCTGTCAGTGATTCAAGATATAGTACTAGTGAAAAAGAGTGTGGAGAAAAACTTTGCACCACTGGACTTGCGAAAAGACACATGAGGTCTTATACAGGAAAGAGACCATTTAGCTGCTCGGTCTGTAAGAAAGCATTTATAAAGAGTGGACATTTACAGGAACACATGAGAGTccacactggagagaaaccatttaaaTGTCCAGTCTGTATGAAAGCTTTTAGGTGGAGTGGACATTTACCAACACACATGAGaacccacacaggagagaaaccatttaacTGCACAGTCTGTAAAAAAGCTTTTACAGTGAGTGGAagtttacagaaacacatgagaatccacacaggagagaaaccatttagctgctccaTCTGTAACAAAGACTTCGTACAGAAAGgacatttacagaaacacatgagaaaCCACACAGGcgagaaaccatttagctgcaCAGTGTGTAAGAAATCTTTCAGACAGAGTGGAAGTTTAACGatacacatgagaatccacacaggagagaaaccattttgctgtgtaatgtgtaagaaatcttttagaGAGAATGGAAGTTTaaagaaacacatgagaatccacacagaagagaaaccatttagctgctcagtctgtaggaaAACTTTTACAGTGAGTGGAAATgtacagaaacacatgagaatccacacaggagagaaaccatttagctgttcagtctgtaagaaagcttttaaTGAGAGTGCACACTTACAGAGACACATGAAaacccacacaggagagaaaccatttgGCTGCTCTATCTGCAAGAAAACTTTCATAGAGATTGGAAATTTAAggaaacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttatTGAGAGTGCACATTTACAGAGACACATGAAaacccacacaggagagaaaccatttgGATGCTCTATCTGCAAGAAAACTTTCATAGAGATTGGAAATTTAAGGAAACACATGACAATCCATGTATTTTAAGACGTGTTGCGTGGAGATCCAGTCTGGAAGGAGAGGAAATTAATGAATTCTTTTAAAGTATTATGAGATGTAATCCTCcttaaaaaatctaaaatccAATAATTAAAATTTTAGGTTTTAAAATGATATATCTTAAATGAAGATTTTTACTGTTTAGCTCCATGGAACTCTAAAGATGAACTTGTTCATTTTTGCAAATTAACTGGACCGGACTTATTAGGAAATTGCATATAGTGCTAGCCCTCTCATAAATGGCAGCTGTTCTGTAGTGACAAGGAATAGCCACCTAACTCAGTCTCCCAGCAGACTCTCCAGTCTTCACTCCTACGTTTGAAGAACTGTGACATTACCGTTAAGGTTGGATACTGAACTTTTTTGGGTACTGACCAAATTACGTCAGTATTACCGAGGACAGCGCGTAATTGCAAGGTTATGTCCTCTCTGCACGTTGACAGAAAGCGGAGCTCATTTTCAGTACAGACGAAGCAAACTATATcatgtctgcagttttgttcaAGTCAAAGTGACTCAAGCCAGTGATGCGattgcaagtgtggttacagacGCTGTTTGcgtatataatataatgtcgCGCCGAAAGTGGCTGTTGACGTTGCACTTTCTCTGAGACAGGCAAGGCCAACAGTagtttctatgccctggtgagTGACTGACAATAGCACATTTGTGTTCAAATTTGTTTAGTAGTATAAACCCCCTGagatagggctgcacgattatggccaaaatgataatcacgattattttgatcaatatcgAGATCACGATTAGTTTTcatgattatttgttgattttaaccaaaacaaattgtattgtcacataggctaattataactgctttcacatccatattgtgctacattcctcctttgttGAAGGATACTATGAAgcagtatgccatttcagctatAGTGGGACCGCTTTCAACACATGCGCATTTGTCGTGAAAAGATACAGGtacaacgcaattttctgttcatctTAACGGCGCACGTTAAAttgcccggtatctaccggacgaaatagcaacgcggattacggtgccacttaaatgtctgcgttgcgctctgatgctccaaaacagaccttagaggcaacagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319478 lncRNA downstream 57903 16349688 ~ 16352857 (-) False LOC120554218
XR_005638349.1 lncRNA downstream 65495 16340797 ~ 16345265 (-) True LOC120554275
TU319473 lncRNA downstream 86524 16322888 ~ 16324236 (-) True G235351
TU319330 lncRNA downstream 89243 16321111 ~ 16321517 (-) True G235242
TU319295 lncRNA downstream 165363 16245127 ~ 16245397 (-) True G235225
TU319560 lncRNA upstream 19700 16873835 ~ 16876854 (-) True G235427
TU319562 lncRNA upstream 21874 16876009 ~ 16916150 (-) False LOC120554268
XR_005638338.1 lncRNA upstream 59463 16913598 ~ 16916699 (-) True LOC120554268
TU319609 lncRNA upstream 321487 17175622 ~ 17175960 (-) True G235471
TU319657 lncRNA upstream 412125 17266260 ~ 17330177 (-) True G235512
XM_039793025.1 mRNA downstream 24465 16380312 ~ 16386295 (-) True LOC120554247
XM_039793023.1 mRNA downstream 24476 16380312 ~ 16386284 (-) False LOC120554247
XM_039792972.1 mRNA downstream 45399 16356822 ~ 16365361 (-) True LOC120554221
XM_039792973.1 mRNA downstream 45478 16356822 ~ 16365282 (-) False LOC120554221
XM_039792971.1 mRNA downstream 48547 16356822 ~ 16362213 (-) False LOC120554221
XM_039792547.1 mRNA upstream 31174 16885309 ~ 16904529 (-) True LOC120553998
XM_039792991.1 mRNA upstream 162069 17016204 ~ 17026731 (-) True LOC120554233
XM_039792990.1 mRNA upstream 289836 17143971 ~ 17160195 (-) True LOC120554231
XM_039792941.1 mRNA upstream 331252 17185387 ~ 17208313 (-) True LOC120554205
XM_039792979.1 mRNA upstream 364056 17218191 ~ 17234702 (-) True LOC120554225
unassigned_transcript_1643 other downstream 23915 16386772 ~ 16386845 (-) True trnat-agu_40
XR_005638580.1 other downstream 35795 16374777 ~ 16374965 (-) True LOC120554797
unassigned_transcript_1642 other downstream 56811 16353877 ~ 16353949 (-) True trnat-cgu_15
TU319322 other downstream 135460 16274758 ~ 16275300 (-) False LOC120554197
XR_005638332.1 other downstream 139288 16265525 ~ 16271472 (-) False LOC120554197
unassigned_transcript_1684 other upstream 9742 16863877 ~ 16863949 (-) True trnat-ugu_45
unassigned_transcript_1685 other upstream 10298 16864433 ~ 16864506 (-) True trnat-agu_60
unassigned_transcript_1686 other upstream 17721 16871856 ~ 16871928 (-) True trnat-cgu_22
unassigned_transcript_1687 other upstream 18906 16873041 ~ 16873114 (-) True trnat-agu_61
unassigned_transcript_1688 other upstream 53278 16907413 ~ 16907485 (-) True trnat-cgu_23

Expression Profile