RNA id: XM_039792957.1


Basic Information

Item Value
RNA id XM_039792957.1
length 2696
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120554212
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16410760 ~ 16854135 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGGTACACTCGTGCGTGCTCCGGTCAGAGCCTTTTCCACCATGGCCGCAGGGGAGCCAGGCATAGCAGACGAGCAGCACATGTCCTTCTGTGTTGCTGTTGACACTACAGGCTGGAGAGACCTCGAAGAGGACGGCGCTCAGACGGACGTTTGATTTTACGTTCACAGAGAGTTTTGGGGAGGAAAGTTCCAGAAGTCACTTTAACATGGACTCGATCTACAGTGACCACACGTACTCGCACTGTTTCAACCATAAAGcttTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACAAagcccccacacattaaagacgAACAGGAGGAGCTCCGGATCAGTCAGGATGAAGAGCCGCTTCAatggctggaggaggctgatgtcaccaagttcccattcactcctgtccctgtgaagagagAAGATGAAGAGAAACCTCAGTTGTCACAGCTTTTTCAAAGACAAACTGAACAGATGAAAagagaagctgatggagaggactgtggaggaccagaaccagccatgAAATTAGATCTAGATACACATTTAGAACTAGCTACTGATGACGAGACTGGAGattcttctgaacctgagactgatgccagtgctgattggaaggagactagagaacctcagtcaggtttaaactctctgaataaTGATGAAGTCCCTGTCAGTGATTCAAGATATAGTACTAGTGAAAAAGAGTGTGGAGAAAAACTTTGCACCACTGGACTTGCGAAAAGACACATGAGGTCTTATACAGGAAAGAGACCATTTAGCTGCTCGGTCTGTAAGAAAGCATTTATAAAGAGTGGACATTTACAGGAACACATGAGAGTccacactggagagaaaccatttaaaTGTCCAGTCTGTATGAAAGCTTTTAGGTGGAGTGGACATTTACCAACACACATGAGaacccacacaggagagaaaccatttaacTGCACAGTCTGTAAAAAAGCTTTTACAGTGAGTGGAagtttacagaaacacatgagaatccacacaggagagaaaccatttagctgctccaTCTGTAACAAAGACTTCGTACAGAAAGgacatttacagaaacacatgagaaaCCACACAGGcgagaaaccatttagctgcaCAGTGTGTAAGAAATCTTTCAGACAGAGTGGAAGTTTAACGatacacatgagaatccacacaggagagaaaccattttgctgtgtaatgtgtaagaaatcttttagaGAGAATGGAAGTTTaaagaaacacatgagaatccacacagaagagaaaccatttagctgctcagtctgtaggaaAACTTTTACAGTGAGTGGAAATgtacagaaacacatgagaatccacacaggagagaaaccatttagctgttcagtctgtaagaaagcttttaaTGAGAGTGCACACTTACAGAGACACATGAAaacccacacaggagagaaaccatttgGCTGCTCTATCTGCAAGAAAACTTTCATAGAGATTGGAAATTTAAggaaacacATGACAATCCATGTATTTTAAGACGTGTTGCGTGGAGATCCAGTCTGGAAGGAGAGGAAATTAATGAATTCTTTTAAAGTATTATGAGATGTAATCCTCcttaaaaaatctaaaatccAATAATTAAAATTTTAGGTTTTAAAATGATATATCTTAAATGAAGATTTTTACTGTTTAGCTCCATGGAACTCTAAAGATGAACTTGTTCATTTTTGCAAATTAACTGGACCGGACTTATTAGGAAATTGCATATAGTGCTAGCCCTCTCATAAATGGCAGCTGTTCTGTAGTGACAAGGAATAGCCACCTAACTCAGTCTCCCAGCAGACTCTCCAGTCTTCACTCCTACGTTTGAAGAACTGTGACATTACCGTTAAGGTTGGATACTGAACTTTTTTGGGTACTGACCAAATTACGTCAGTATTACCGAGGACAGCGCGTAATTGCAAGGTTATGTCCTCTCTGCACGTTGACAGAAAGCGGAGCTCATTTTCAGTACAGACGAAGCAAACTATATcatgtctgcagttttgttcaAGTCAAAGTGACTCAAGCCAGTGATGCGattgcaagtgtggttacagacGCTGTTTGcgtatataatataatgtcgCGCCGAAAGTGGCTGTTGACGTTGCACTTTCTCTGAGACAGGCAAGGCCAACAGTagtttctatgccctggtgagTGACTGACAATAGCACATTTGTGTTCAAATTTGTTTAGTAGTATAAACCCCCTGagatagggctgcacgattatggccaaaatgataatcacgattattttgatcaatatcgAGATCACGATTAGTTTTcatgattatttgttgattttaaccaaaacaaattgtattgtcacataggctaattataactgctttcacatccatattgtgctacattcctcctttgttGAAGGATACTATGAAgcagtatgccatttcagctatAGTGGGACCGCTTTCAACACATGCGCATTTGTCGTGAAAAGATACAGGtacaacgcaattttctgttcatctTAACGGCGCACGTTAAAttgcccggtatctaccggacgaaatagcaacgcggattacggtgccacttaaatgtctgcgttgcgctctgatgctccaaaacagaccttagaggcaacagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319478 lncRNA downstream 57903 16349688 ~ 16352857 (-) False LOC120554218
XR_005638349.1 lncRNA downstream 65495 16340797 ~ 16345265 (-) True LOC120554275
TU319473 lncRNA downstream 86524 16322888 ~ 16324236 (-) True G235351
TU319330 lncRNA downstream 89243 16321111 ~ 16321517 (-) True G235242
TU319295 lncRNA downstream 165363 16245127 ~ 16245397 (-) True G235225
XR_005638360.1 lncRNA upstream 73159 16505591 ~ 16506631 (-) True LOC120554287
XR_005638345.1 lncRNA upstream 130372 16562804 ~ 16567091 (-) False LOC120554273
XR_005638344.1 lncRNA upstream 130372 16562804 ~ 16567016 (-) True LOC120554273
TU319509 lncRNA upstream 130382 16562814 ~ 16567015 (-) False LOC120554273
TU319516 lncRNA upstream 179551 16611983 ~ 16613711 (-) True G235387
XM_039793025.1 mRNA downstream 24465 16380312 ~ 16386295 (-) True LOC120554247
XM_039793023.1 mRNA downstream 24476 16380312 ~ 16386284 (-) False LOC120554247
XM_039792972.1 mRNA downstream 45399 16356822 ~ 16365361 (-) True LOC120554221
XM_039792973.1 mRNA downstream 45478 16356822 ~ 16365282 (-) False LOC120554221
XM_039792971.1 mRNA downstream 48547 16356822 ~ 16362213 (-) False LOC120554221
XM_039792978.1 mRNA upstream 99530 16531962 ~ 16556455 (-) False LOC120554223
XM_039792976.1 mRNA upstream 99530 16531962 ~ 16556455 (-) False LOC120554223
XM_039792975.1 mRNA upstream 99530 16531962 ~ 16556455 (-) True LOC120554223
XM_039792942.1 mRNA upstream 184271 16616703 ~ 16638195 (-) True LOC120554206
XM_039793051.1 mRNA upstream 303754 16736186 ~ 16742288 (-) False LOC120554263
unassigned_transcript_1643 other downstream 23915 16386772 ~ 16386845 (-) True trnat-agu_40
XR_005638580.1 other downstream 35795 16374777 ~ 16374965 (-) True LOC120554797
unassigned_transcript_1642 other downstream 56811 16353877 ~ 16353949 (-) True trnat-cgu_15
TU319322 other downstream 135460 16274758 ~ 16275300 (-) False LOC120554197
XR_005638332.1 other downstream 139288 16265525 ~ 16271472 (-) False LOC120554197
unassigned_transcript_1644 other upstream 23956 16456388 ~ 16456461 (-) True trnat-agu_41
unassigned_transcript_1645 other upstream 68026 16500458 ~ 16500530 (-) True trnam-cau_66
unassigned_transcript_1647 other upstream 72426 16504858 ~ 16504930 (-) True trnat-cgu_16
TU319517 other upstream 179551 16611983 ~ 16616316 (-) False G235387
unassigned_transcript_1673 other upstream 296002 16728434 ~ 16728507 (-) True trnat-agu_55

Expression Profile