RNA id: XM_039792958.1


Basic Information

Item Value
RNA id XM_039792958.1
length 2492
RNA type mRNA
GC content 0.55
exon number 18
gene id LOC120554214
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17390637 ~ 17432254 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGTGGCTCGTTCTGTTGTTGAGTCACCGGGAGAGAACCGCGACCGTTACTCGGCTGAGAAAAGCCGACTCCCTTGTTAGAAGCTGCGCCTCTACTCCTCCAGATTTCTTCGCTCGGCCTTACGTTCGTTACATCATCCAGATATTCTTCTCAACGGGattgaaatgttacattttcgGTCAACGGTAGCGCTCAAGGAGTTATTTCAAACGCAGCTGAAGCGTCCATTGACAGGTAGAGTTGGTGTTAAAGCGACACCTGCGACCGCCGCCTGCTTCAGCACCCGTAGTTTGGATGGGAGGTCGCCGGGCAGACGGAGTGCATTTCCCCCGCAGCACTTCACCACAAGACACGGCGTTAGAGGCTTTTGCTCCAAGAGTGACAGCCACAATGAAGCCGCCAAGGACTCGACAGAGAAGAGAAGGAAGGCAGGCATCCTGCCCAGCCTGGAGGACCTGCTCTTCTACACCATCGCAGAGGGCCAGGAAAAAATCCCAGCGCACAAATTCACAACGGCTCTCAAAGCCACGGGGCTTCGTACGGGAGACCCTCGGCTGAAAGAATGCATGGAGATGCTGAAGGTTACGGTGAAGACGACGTCTGATGGGGCACTGGACCGACACCTCTTCAAAAAGTGTGTCCAGAGCAACATTGTTCTGCTCACCCAGGCCTTCAGGAAGAAGTTTGTCATCCCAGACTTCCAGTCCTTCTGCGCCCACATGGACGAGCTCTATGTCAAAGCCAAAAACCTGTCCGGAGGGCAGGTGGCCGACTACATTCCCCAGCTGGCCCGCTTCAGCCCAGACCTGTGGGCCGTCGCTCTGTGCACCGTCGACGGACAGAGGCACACTGTCGGCGACACCAAGGTTCCTTTCTGTCTGCAGTCTTGTGTGAAGCCGCTGAAATACGCCATCGCCGTGCACGACCACGGCACGGAGTACGTGCACCGCTTCATCGGCAAAGAGCCCAGCGGCCTGCGCTTCAACAAGCTCTTCCTGAACGAGGAAGaTAAACCACACAACCCCATGGTTAATGCCGGCGCTATTGTCTGTACCTCCCTCATCAAGCAAGGGGCAAGCAACGCTGAGAAATTTGACTATGTCATGAACTTCATGAACAAACTGGCAGGAAACGAGTACGTGGGCTTCAGCAACGCCACTTTCCAGTCGGAGCGAGAGTCTGGAGACAGAAACTTTGCCATCGGCTACTACCTGAAGGAGAAGAAGTGTTTTCCAGAGGGGACAGACATGACGTCCATCCTGGACTTCTACTTCCAGTTGTGTTCCATCGAGGTGACCTGCGAGAGCGCCAGCGTCATGGCGGCGACCCTGGCCAACGGCGGCTTCTGTCCAATCACAGGAGAGCGTGTGCTGAGCCCCGAGTCGGTGCGAGACACTCTGAGTCTGATGCATTCCTGCGGCATGTACGACTTCTCCGGGCAGTTCGCTTTCCACGTCGGTCTGCCGGCTAAATCCGGCGTCGCCGGTGGCATTCTGCTGGTTGTTCCAAACGTGATGGGCATCATGTGTTGGTCTCCACCGCTCGACAAGCTGGGCAACAGCGTCCGAGGCATCCAGTTCTGCACGGACCTGGTTTCCCTCTGTAACTTCCACAACTACGATAACCTGAGACACTTTGCTAAGAAACTGGATCCTCGCAGGGAGGGGGGAGACCAGAGGGTGAAGTCTGTGATCAATCTGCTGTTTGCTGCCTACACCGGAGACGTCTCCGCCCTGAGGAGGTTTGCGTTATCCTCCATGGACATGGAGCAGAGGGACTACGACTCCAGGACGGCCCTGCACGTGGCAGCTGCTGAAGgacATGCTGAGGTAGTTCGCTTCCTGCTGGAGGCCTGTAAAGTCAACCCAGTTCCCAAAGACAGGTGGGGGAACACACCGATGGATGAGGCAGTCCACTTTGGCCACCACGATGTGGTGACCATCCTCCGCGATTACCACACCCAGTACAGCCCTCAGGAAAGCAGCGGCGACGACAAGACCAACGCAGAGAAGAACCTGGACGGGATGCTCTGATGGAAAACGCCCTGAGAAAAGAAGCTGGATTGGTCAacacgttctcactcccatAGCGTCAAAAAGCAACGCctggtcaggtgccttttggCGTGAGTTGCTTACTTAAAAAGTCTcctttggcgtcactttttgatgctctgggtcgggacctttggcttcactttttgacgctcatGGTCTGGAcctttggcgtcactttttgacgctctgtgTCGGGACCTTTGGCGTCGctatttgacgctctgggtcgggaccttTGGCGTCACATTTTttacgctctgggtcgggaccttTGGCGTCActatttgacgctctgggtcgggaccttTGGCGTCACTATTTGACGCTCTTGGTCGGGAcctttggcgtcactttttgacgctctgggttggGACCTTTGGGTCAcatttttgacgctctgggtcgggaccttTGGCGTCActatttgacgctct

Function

GO:

id name namespace
GO:0006541 glutamine metabolic process biological_process
GO:0004359 glutaminase activity molecular_function

KEGG:

id description
K01425 glsA, GLS; glutaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319689 lncRNA downstream 25202 17365200 ~ 17365435 (-) True G235542
TU319657 lncRNA downstream 60460 17266260 ~ 17330177 (-) True G235512
TU319609 lncRNA downstream 214677 17175622 ~ 17175960 (-) True G235471
XR_005638338.1 lncRNA downstream 473938 16913598 ~ 16916699 (-) True LOC120554268
TU319562 lncRNA downstream 474487 16876009 ~ 16916150 (-) False LOC120554268
TU319802 lncRNA upstream 80363 17512617 ~ 17544436 (-) True G235635
XR_005638357.1 lncRNA upstream 256716 17688970 ~ 17707496 (-) True LOC120554284
TU319867 lncRNA upstream 418814 17851068 ~ 17851341 (-) True G235688
TU319870 lncRNA upstream 421930 17854184 ~ 17855048 (-) True G235691
TU319874 lncRNA upstream 425812 17858066 ~ 17858278 (-) True G235695
XM_039793020.1 mRNA downstream 105325 17278354 ~ 17285312 (-) True LOC120554244
XM_039792979.1 mRNA downstream 155935 17218191 ~ 17234702 (-) True LOC120554225
XM_039792941.1 mRNA downstream 182324 17185387 ~ 17208313 (-) True LOC120554205
XM_039792990.1 mRNA downstream 230442 17143971 ~ 17160195 (-) True LOC120554231
XM_039792991.1 mRNA downstream 363906 17016204 ~ 17026731 (-) True LOC120554233
XM_039792981.1 mRNA upstream 8142 17440396 ~ 17473159 (-) False nab1b
XM_039792980.1 mRNA upstream 8142 17440396 ~ 17466406 (-) True nab1b
XM_039792983.1 mRNA upstream 8142 17440396 ~ 17466402 (-) False nab1b
XM_039792937.1 mRNA upstream 58913 17491167 ~ 17507260 (-) True LOC120554203
XM_039792938.1 mRNA upstream 60533 17492787 ~ 17507261 (-) False LOC120554203
TU319472 other downstream 287120 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 482219 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 482815 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 483152 16907413 ~ 16907485 (-) True trnat-cgu_23
unassigned_transcript_1687 other downstream 517523 16873041 ~ 16873114 (-) True trnat-agu_61
TU319844 other upstream 302477 17734731 ~ 17745200 (-) False s100b
TU320378 other upstream 2299065 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 2935087 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 3294149 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 3294276 20726530 ~ 20728427 (-) False G236340

Expression Profile