RNA id: XM_039792961.1


Basic Information

Item Value
RNA id XM_039792961.1
length 2471
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120554215
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15738442 ~ 15754859 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACAAGAAAGATCTACTCAGAGAATTGCAAGAAATTTGCTTGGAAGAAGTGTCTCTGAAAAGTATTTTAGAAGTAGGATCAAGCGGGAGGGGAAAACgttgttttttcaaatttgTAATAGACACTGGGCTATATAGCCGGATATAGTGCTAATATAGTAGATTGCAGCAATGCAACTTATTGGATGCCGGCTGCCGTAAAAtcccagagaagaagaagaagatgaagaagtacaccaacaagaagaagaagaagaagacgaagaCGACGACGACCGGAAGTAGATATATTGTATTGTGGATAAGTTGTAACGTTGTTCATTTGACAATATTAACGTTATTATTTAGGTTATTTCAGGAAAAATGGGTCAGTATTGCTGCATTGTGAACTGCTACAATAGGTCTCACGATCGACAGGGCAAACGCCTGATAAATGGTATTAGTTTTCACCATTTTCCTACTTGGAAAAAGACGCAAGGAGACCTGGTGTCCGACCTCACAAAGAGGCGTCGCATGGCTTGGGTCGCCGCTGCACGGAGGAAAACCATCACCTTCGACAACATTTCCAAAGACATGCTTGTTTGCTCACGGCACTTTCACAAAGgcAAGCCAGCATATGAAATGTTTCAGTGCGACCCTGACTGGGCGCCGTCGCTACACCTTGGTCCCACAGGCGTCGGTGGCAATTCTGCCGGATGTAAGCGGAGGATTCAACGGCAGCAAGCTGCAGTTGTGTCACCCTTTGCCACACCTTCTGCCGCCACATCTGATGATGCTTGCTGTGTCGCACCTGTTGACTCATCCGATGACCCACCTGTTGACACACCCATGGCCGATGACACACCCTCTGACTCTGCAGcTTTACCTTCAGATGTCCAGATGGTGATTGTTGGTGAAGAACATCAGCACGAGTGGAGCTCCAGTCTGGACCAGGAGCACGCAAatcccccacacattaaagaggaacaggaggaactctgGACCAGTCTAGTGCGAGAGCGGTTTCAAGGGCTGGAGGTGTTCCCATACAGTCCCGTTCCTGTGaggagtgaagatgatgaagggAAACCTCAGttctcacagcttcatcaaagacaaactgAACAGATGAAAACTGAAGCTGACAGAGAGTACTGTGGaagaccagaaccagccaggaccTCAGATCCAGATTCACAATCACAACCAGATACTGATGACgggactggagactcttctgaacctgagacggatgacagtgctgattggaacgagaccagagaacctcagtcaggtttaaactctctgaataaTGATGAAGTCCTTGTCAGTGATCTGAGACGTAGTACCGGTGAGCAACGGTGTGGGAAAAGATCTGGCACCAGTAGACTTCTGAAGCGACACGGGAGATCTCATACAGGAAAGcgaccatttagctgctcagtctgtgaGAAAGATTTTAAACAGAGGGGACATTTACAGGaccacatgagaatccacaccgGAGAAAAACCATTtggctgctcagtctgtaagaaagcttttacCGTGAATGGAAATTTACAtagacacatgagaatccacacagaaAAGAAAGCTTTATTGGAGAGTGTATATCCACAGAATCACATGATGACCCACATAGGAGATAACACTTTCAGCTGCAGTATCTGTGACAGAATGTTCAACAGGCCTCGTCAGctcagaaaacacaaatgtgTTGGTCAGATGGAAACAGAAGCCGACGGAGAGGACTGTgaaggaccagaaccagccaggaacacGCATCCAGATTCACAATCGCAACCAGATACTGATGACgggactggagactcttctgaacctgagacggatgacagtgctgattggaacgagaccagagaacctcagtcaggtttaaactctctgaataaTGATGAAGTCCTTGTCAGTGATCTGAGATGTAGTACCGGTGAGCGACGGTGTGGGAAAAGATCTGGCACCAGTAGACTTCTGAAGCGACACGTGAGATCTCCTACAGGAAAGcgaccatttagctgctcagtctgtgaGAAAGATTTTATACAGAGGGGACATTTACAGGACCACATGAGaacccacacaggagaaaaaccatttggctgctcagtctgtaagaaagcttttacTGTGAATGGAAATTTACATAGGCACATGAGAATGCACACAGAAAAGAAAGCTTTATTGGAGAGTTGACCTCCACAGAAACACATGAGGACCCACATAGGAGAGAACCCTTCCAGCTGCAGTATCTGTGACCGAATCTTCAACAGGCCTCGTCGGCTCAGAAAACGTTAAAATGTGTTGgtcacatggaaacagaagccgacggagaggactgtggaggaccagaaccagccaggaacacATATCCAGATGTACATTTACAACCAGATACTGATGACGAGACTTGACACTGTTCTGAACTTGAAACTGATGACAGCAATGCTTGggaaaaactgaaaatgcaTGAA

Function

GO: NA

KEGG:

id description
ko03030 DNA replication

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319122 lncRNA downstream 72560 15660293 ~ 15665882 (-) True G235075
TU319096 lncRNA downstream 181026 15556638 ~ 15557416 (-) True G235053
XR_005638347.1 lncRNA downstream 252955 15482306 ~ 15485487 (-) False LOC120554274
TU319213 lncRNA upstream 127766 15882625 ~ 15883001 (-) True G235151
XR_005638352.1 lncRNA upstream 218716 15973575 ~ 15991395 (-) True LOC120554279
TU319276 lncRNA upstream 376727 16131586 ~ 16132246 (-) True G235208
TU319284 lncRNA upstream 445473 16200332 ~ 16200591 (-) True G235215
TU319295 lncRNA upstream 490268 16245127 ~ 16245397 (-) True G235225
XM_039792969.1 mRNA downstream 38739 15684567 ~ 15699703 (-) True cep70
XM_039792970.1 mRNA downstream 38772 15684567 ~ 15699670 (-) False cep70
XM_039792968.1 mRNA downstream 38882 15684567 ~ 15699560 (-) False cep70
XM_039792966.1 mRNA downstream 60475 15672137 ~ 15677967 (-) True LOC120554219
XM_039793012.1 mRNA downstream 83877 15636430 ~ 15654565 (-) False LOC120554239
XM_039793008.1 mRNA upstream 12911 15767770 ~ 15781203 (-) True LOC120554237
XM_039792543.1 mRNA upstream 130785 15885644 ~ 15905030 (-) True LOC120553994
XM_039792943.1 mRNA upstream 199009 15953868 ~ 15966585 (-) True LOC120554208
XM_039792944.1 mRNA upstream 199009 15953868 ~ 15962533 (-) False LOC120554208
XM_039792545.1 mRNA upstream 421870 16176729 ~ 16183893 (-) True LOC120553996
XR_005638386.1 other downstream 724628 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1569 other downstream 776009 14962361 ~ 14962433 (-) True trnar-ccg_4
TU318891 other downstream 888705 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1568 other downstream 2626214 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 2681755 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1570 other upstream 31462 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 33468 15788327 ~ 15788399 (-) True trnak-cuu_17
unassigned_transcript_1572 other upstream 34789 15789648 ~ 15789719 (-) True trnav-cac_14
unassigned_transcript_1573 other upstream 35357 15790216 ~ 15790288 (-) True trnak-cuu_18
unassigned_transcript_1574 other upstream 36458 15791317 ~ 15791388 (-) True trnaq-uug_7

Expression Profile