RNA id: XM_039792970.1


Basic Information

Item Value
RNA id XM_039792970.1
length 1755
RNA type mRNA
GC content 0.55
exon number 14
gene id cep70
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15684567 ~ 15699703 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGgcggtccaccggaaggggagggacttcgcctctctatTGGTTTAGGTCACAGCGCCCTTGTTTGAATGGGGGAAGACGCGTATCGTAAATAGTCAAACAGGAACAGCAGGCAGAATGGGATGACGTGAATAAACTTCTGCAGCGTCACGGTTTTAAGCCCGTGCACTTTGCAGATCCTGTAGAGAACAAGAATCTTTCAGATCTGATTCTGCTGGACAAGAAGTCGGCCGGTGAGATCAGGAGGACTCTAAAGATGATGCTCACAGACTCGGAGAGAAGACAGGCTCTGATCCAGGAGCTCGTCAAGTCCAACAACCAACTCAAaGAGGAGGCTCATGAGCACACTCTTGGAGCAGCTCAGCAGTGTGAGCGGGCTGCTGAGCTGGAGGCGCTGCTGGCCGTGGTGAGGACCAGAGTCCAAGACCTGGAGGACCGCTGCCTGGCCAAGGCTGTCCAACAGCACAGCCACACGCAACAACTGCAGCGGGAAAACCAGGAGGCACAGGAACGGTGTCAGGTCCTGGAGCAGAAGCTGTCCGAACAGAGGGAGGAAGTCGCTCAGCTTCGGAGGAAACTGTATTTCACCGTCAAAGAAGAAGAGCAGCGATTGGCTCGCCAGGGTCGCGCTCTCCAGCACGTCTGCAACACGGCGAGCCGGCAGAACTCCCCAGCAGAGCAGCAATCTGTCAACGGAGAACCGGGAGGATCTCACGTGGCTAATCAGACCAAAATCAAGAATGTTACTCCATCTCTCAAAGCCATCCTCAAGGCATACCAGGAACAGCAGAAGGGAAGCGCAGCTCAAATAGAAGAGCTTAAGAGGGAGGTGGAGCGCCTGAAGCGAGAGCTGGAGACGAGATTGCCTAAAGAAGACAACACGGCTGAGAGCAGCGAGGATATCGGTTTGTGTGCCCACTATCTGTTGGATGAGATCAGTGCCGTTGTGAACAATCCCAACTCTCCGTTACGCCTGCACCGACAGAAACCCTCCTCTGTTGGTTTGGAGCTGGCTGAGTTTCAGACTCTGCTCCCCACACTGGAGGTCTGGGCCCAGCAGCTCCACCTCCTGAAGgatctGCAAAGAGGTTTGTGTAAACTGAAAGGCAGACTGATGCCCTGGCAGCCTCCTGACGGTGGCCATAATGCTGTAGAAGCATTGAAGGTGGAGGACATGATGTTGCTGGTGGACACCATGCTGGAAAACACCTTGTCTGGTGAGGAGAAGGTGCTCCGGAGTCCCACCCGCTACACTCTGGGCTCCATGGTGTCTCACTTCCAGAAGCTGTTTGACGTCCGCTCCCTCAGCGGAGTGTTCCCGCGAATGAACGAGGTCTACACCCGGCTGGGAGAGATGACCAACACCATGAGGAACCTGCGAGATGTCCTGCAGCTAGACTGCAGGGTTCCTCCGGCCGAGCTGGTGAACCACGTATCCAGGCTGGTTTCCTCCACTGAACGCGCTGCCGCACTCCACCAGCTGCTGGGAGAGGCGGACGTTGACAGGATCCTGGTCAAAGTGAAGCAGCACCACGAGTTCTTCCCTGCTTTCCACGCCCTCATCACGGACATTTTACACACTCTGGGAGTGAATCACCTGGACGCCATCATTCCCGCTCTGCAGTCTTTGAAACAAACGGCCCAGTGACGGCACGTTGGTTCTTCTGAACTCAGagctccgtttttttttttattcgacGTGAGGACTTTTGTTTGGAATAAAAAGTCAACATTTGATGAATGAGTCACCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319122 lncRNA downstream 18685 15660293 ~ 15665882 (-) True G235075
TU319096 lncRNA downstream 127151 15556638 ~ 15557416 (-) True G235053
XR_005638347.1 lncRNA downstream 199080 15482306 ~ 15485487 (-) False LOC120554274
TU319213 lncRNA upstream 182955 15882625 ~ 15883001 (-) True G235151
XR_005638352.1 lncRNA upstream 273905 15973575 ~ 15991395 (-) True LOC120554279
TU319276 lncRNA upstream 431916 16131586 ~ 16132246 (-) True G235208
TU319284 lncRNA upstream 500662 16200332 ~ 16200591 (-) True G235215
TU319295 lncRNA upstream 545457 16245127 ~ 16245397 (-) True G235225
XM_039792966.1 mRNA downstream 6600 15672137 ~ 15677967 (-) True LOC120554219
XM_039793012.1 mRNA downstream 30002 15636430 ~ 15654565 (-) False LOC120554239
XM_039793011.1 mRNA downstream 30002 15636430 ~ 15654565 (-) True LOC120554239
XM_039793031.1 mRNA downstream 50947 15623152 ~ 15633620 (-) False LOC120554251
XM_039792961.1 mRNA upstream 38772 15738442 ~ 15754859 (-) True LOC120554215
XM_039793008.1 mRNA upstream 68100 15767770 ~ 15781203 (-) True LOC120554237
XM_039792543.1 mRNA upstream 185974 15885644 ~ 15905030 (-) True LOC120553994
XM_039792943.1 mRNA upstream 254198 15953868 ~ 15966585 (-) True LOC120554208
XM_039792944.1 mRNA upstream 254198 15953868 ~ 15962533 (-) False LOC120554208
XR_005638386.1 other downstream 670753 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1569 other downstream 722134 14962361 ~ 14962433 (-) True trnar-ccg_4
TU318891 other downstream 834830 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1568 other downstream 2572339 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 2627880 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1570 other upstream 86651 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 88657 15788327 ~ 15788399 (-) True trnak-cuu_17
unassigned_transcript_1572 other upstream 89978 15789648 ~ 15789719 (-) True trnav-cac_14
unassigned_transcript_1573 other upstream 90546 15790216 ~ 15790288 (-) True trnak-cuu_18
unassigned_transcript_1574 other upstream 91647 15791317 ~ 15791388 (-) True trnaq-uug_7

Expression Profile