RNA id: XM_039792978.1


Basic Information

Item Value
RNA id XM_039792978.1
length 2232
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120554223
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16531962 ~ 16556455 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGCCATTAaatcaaagaagaagaagaagaagaagaagacgacagTTCATATTTTTCCGACCTAGCTAAATATGTCAATGAGCTAAACACCGGAGGGAAGCAGTTAGCTGAATCCAAACGACGGCAGTAAAACCCCCGAGGAGTTAGTTTGTTACTCTGAGATGGACCGACGCCGGAAACAGAAGCTGCGAGGAGAAGctATACCATCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCACCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGATACAAAGCCCCCACACATTAacgaggaacaggaggaactgccGATCAGGCAGGGCgaagagcagcttcaagggcccGAGGAGGCAGATATCACCAAGTTCTATGTTCCaatgaagagtgaagatgaagAAGAGAACTCTCGGTTCTCACAActtcatcaaagacaaactgaagagatgaaaacagaagctgatggagaagACAGTGGAGGatcagaaccagccaggaactcagaTCCAGATACACATTTACAACCAGATACTGATGAcaagactggagactcttctgaatcTAAGACTTATGACAGTAATTGTTGGAAGGAGACCAGGGAATCCCAGTCAGACTTGTTTGTAGGTAACAGCCACCCAACTCGGTCTCCCTTAAGGCCCAGACAGACCGACCAGAcagccgaccctcggcagaaaaggcagttgggaGTGATCAGTCTCCCAGAGTTGAAAAATCCccaaaagtgcctcggaacacccCAAAGCGACAAGATGTAATACATCTCCTTAACAGCAGgaggcgctaatctgtattgtcgcccaaaaaatgaaaaccggcagctgattggacgaacacgtcaAGTAGGTCTGGTTTCtgcggaaattcaaagacacggtcatggcggcttgttcagaatatgatctcatattgtactaaaatagttcaccgaaatgtgtttctgaaaacattttaagcgagaaataggccatgtagttgctgaatctgtcttcatttcagatcgacaaaggtcagtttaaaagattttcgtcagattttgagagactctagttaCGCTCATTCAGCTCCCCgattccgggttagcactctaccaatcagatgggtcattttaGTCCGACTGCCAGCAGTGCCCACCCCTCATGTCAAATGGGCCAAAACGAAGGACGACGGCCCCTCCGAGGGACACTGCACGGAATGcaccgaacagacttgagtcactgacctcgccagactgtctgacgGCTGATTATCGACTCGGTGTGTCTGGACCTTTAAGTGTGAAGTGCTGTGATCTCACCAACCCTTATAAAAGTACCAACTGCTATTGTTCTTGACTCTTCTCTACTACAGAATGAGCAACAACTCTACTGCATCTCTCAGCAGGGGGTCCAGATCAGCTCAAGTAGCCCAACGCAGAAATTCCACAATTCTCCCAGCCTGGCTTTCCCAAAACAATGGAACTGCCGCGCTAATAAAGGATTTATTTCTGTAGTAATGTACATGTATTGAATTTGATTTCATCCAacttttattgtttaaatttttCTTGTGGTGcgtatgatgggcttatggtgttgtcattcaTACATGTTTTTTTGGGTCTATGGTTTATCGACTATTTTGTTACTATTCTGTTGAATGACCTGGAATATTGTAGTTAGTgcgtcatcttttcttgatatttttttttttgtttgtcggTGTGGCTGGTGATGACTGAAGGGGGTGGGGAGGAGATTTTTTCATGTTgcgagtttttatttttttattttgttaaaggaaaaattgttaatcacaaaaaagaaGTGGAGGTGCTCTAGAGTTTGCACATCTTTgagttttcaacattttattatAACAAATTCTGTATGCATACTTTGCATTGATCCAGTAGCATAAAAATATaaacgcacacatacatactgtatatatatatacacattcatAGTCTTCATAAGAAATCCACCAGCCAAGCATATTTTTAACTAGCCATTGCTTTTTTGAgtcacatatactgtacattttgttcAGTAGACAATGTACTTCACTATATCAACTTCACATCAAAAAGTAGAAAGGACTGTAAACATGCTCAGTGTCCTCAGACCGTCTTGAGTGTGTAATAACTGGTGTGCATGTCTTCACTGAATATGTAAAATGAATGCCATAATTAAATACCATTATTAAATGTAATAACAGTAATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638360.1 lncRNA downstream 25331 16505591 ~ 16506631 (-) True LOC120554287
TU319478 lncRNA downstream 179105 16349688 ~ 16352857 (-) False LOC120554218
XR_005638349.1 lncRNA downstream 186697 16340797 ~ 16345265 (-) True LOC120554275
TU319473 lncRNA downstream 207726 16322888 ~ 16324236 (-) True G235351
TU319330 lncRNA downstream 210445 16321111 ~ 16321517 (-) True G235242
XR_005638345.1 lncRNA upstream 6349 16562804 ~ 16567091 (-) False LOC120554273
XR_005638344.1 lncRNA upstream 6349 16562804 ~ 16567016 (-) True LOC120554273
TU319509 lncRNA upstream 6359 16562814 ~ 16567015 (-) False LOC120554273
TU319516 lncRNA upstream 55528 16611983 ~ 16613711 (-) True G235387
TU319479 lncRNA upstream 125272 16681727 ~ 16711192 (-) True G235357
XM_039792957.1 mRNA downstream 99530 16410760 ~ 16432432 (-) False LOC120554212
XM_039792953.1 mRNA downstream 99530 16410760 ~ 16432432 (-) False LOC120554212
XM_039792954.1 mRNA downstream 99598 16410760 ~ 16432364 (-) False LOC120554212
XM_039792955.1 mRNA downstream 99604 16410760 ~ 16432358 (-) False LOC120554212
XM_039793025.1 mRNA downstream 145667 16380312 ~ 16386295 (-) True LOC120554247
XM_039792942.1 mRNA upstream 60248 16616703 ~ 16638195 (-) True LOC120554206
XM_039793051.1 mRNA upstream 179731 16736186 ~ 16742288 (-) False LOC120554263
XM_039793050.1 mRNA upstream 183214 16739669 ~ 16742288 (-) False LOC120554263
XM_039792952.1 mRNA upstream 268202 16824657 ~ 16854133 (-) True LOC120554212
XM_039792547.1 mRNA upstream 328854 16885309 ~ 16904529 (-) True LOC120553998
unassigned_transcript_1647 other downstream 27032 16504858 ~ 16504930 (-) True trnat-cgu_16
unassigned_transcript_1645 other downstream 31432 16500458 ~ 16500530 (-) True trnam-cau_66
unassigned_transcript_1644 other downstream 75501 16456388 ~ 16456461 (-) True trnat-agu_41
unassigned_transcript_1643 other downstream 145117 16386772 ~ 16386845 (-) True trnat-agu_40
XR_005638580.1 other downstream 156997 16374777 ~ 16374965 (-) True LOC120554797
TU319517 other upstream 55528 16611983 ~ 16616316 (-) False G235387
unassigned_transcript_1673 other upstream 171979 16728434 ~ 16728507 (-) True trnat-agu_55
XR_005638337.1 other upstream 179731 16736186 ~ 16742288 (-) True LOC120554263
unassigned_transcript_1675 other upstream 199538 16755993 ~ 16756065 (-) True trnat-cgu_19
unassigned_transcript_1684 other upstream 307422 16863877 ~ 16863949 (-) True trnat-ugu_45

Expression Profile