RNA id: XM_039792986.1


Basic Information

Item Value
RNA id XM_039792986.1
length 1794
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC120554228
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15854568 ~ 15881314 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGaggcaacaaaaatattgcGTCCAATCTGGAAACGAAATCCTGAGTCTTGCCAGAGTTGGGGGGCGCTCCCGTCGTCTCAACcatttggtAATGGAGGAGAGGAGTGAGGAGTGTTTCTCTGTCCGGGTTTTCACTTTGCAGGAAAAGCATCTGGCGGCGGACGAGGACATGGACACACATGACCAGCAGGTCAGTGTGTGCAGACAGCGGGCCGAGCAGGAGCTCTGTGTGATCCTCAGCACGCGGCCAGAGGCTCAGCAGCTTACTGTGCATGAtgCCAACAGAACACTCTTCCAGTTCGCCGTTTCCAAGGAGACGGATTGCTGCCAGGTCGGAGGACAGTCCTTCCTGTTTACCGTCGGCAAGCTGAGTCTCCTTCTGCGGTTCAAAACTCCAACTGATATGAAGAACTTCCAGCAGTTATTGAAGAGAGGGGAGGATGGAGGGGCTGGGAAAGGTTGCACAGAAGGAGACGAGAGAGGAAAGCAAACACCTTCTAGGAGACATCCCACTGTGGTCgaatccagggctgaaaatgtcccCACACAGATCTCCCAGTTCCACAGCTGTCTGTCGCAGCAGCAGAGCCTGCTTCAGGACTACCTAAGGATCGCCACCTACCATCGAGCCATTTTAGTCAACGAGAGAGACTTCAGAGGCAAGgTGGTTCTGGACGTGTGTCGTGCTTCTGGTGTTCTGTCTTTCTTTGCAGTCCAGGCAGGAGCCAGTAGAGTGTATTTGGTCGAGTCCAGCCCTATGGCCAAGTTTACCCAGATCCTGGTCCACAGTAACCGTCTATCGGAGCGGATCAGCGTCCTGGAAGGGGAAGTGGACGAGATCAGTTGTCCTGACATGGTGGACGTCATTGTCTCTGAGCCGATGGGATACATGCTGCTCAATCAGAGACTCATGGAGAGCTTCTTGCGAGCCAGAAAATGGCTCAAACCCAACGgtctGATGTTTCCCTCGTTTGGAGATCTTCATCTGGCTCCCTTCAACGACGAGCAGCTCTACCTCGAACACTACGCACGAGCGAGTTTCTGGCAGCAGAGAAACCTCTATGGAGTGAACCTGAGTGCTCTTCACAGCGCTGCAGTGGACGAGTTCTTCAGGCAGCCCATAGTGgacACATTTGATGTGCAGATCCTGATGGCCAGGTCTGTGAAGCACTGCATCAACTTCATGGAGGCTAAAGAAGAAGATTTACAGCGAATAGAGATCCCCTTTGTGTTTTCCCTGCTGCAGCCTGGTCTGGTCCACGGACTCGCCTTCTGGTTCGACGTGGCCTATTTGGGATCCAAGTCGACAGTGTGGCTGTCCACGGCGCCCACAGAGCCTCTGACCCGCTGGTATCAGGTCAGATGTTTGCTGCAGACGCCGCTTTTCGCCAAGCTGGGACAGACTCTGTCTGGGACTGTCCTGATGGACGCCAACAGCAGCCAGAGCTATGACATTCACATCACCGCCACAGTCGACCAATCAGGCTTCAGATCTGGAAACGTCCTGGACCTCAAGAACCCTTTCTTCAGGATTTCGTCTTGGTAAAGACCCGCGGACCGTCGGAGACCGGGACGTCTCCCCTCCAGGATGAAGAGCGAGGATAACGGAGGAGCCTCATCAGGAATCATCAGATGACTCCACACAACATAACTCAAACACATCGGTTCTGAACGTAACGCTCTGTTACCCTAACTCATCTTCAGAGGTGTGAACGTCAGACAGACGTCTGCTTGTACTGTATTCATACACGGAAATAAACCTGTAAAAAGTTCACttaaacacattaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319126 lncRNA upstream 177749 15676977 ~ 15683490 (+) True LOC120554272
XR_005638343.1 lncRNA upstream 178424 15677238 ~ 15682815 (+) False LOC120554272
TU319121 lncRNA upstream 193883 15666872 ~ 15667356 (+) True G235074
TU319100 lncRNA upstream 246686 15614216 ~ 15614553 (+) True G235056
XR_005638356.1 lncRNA upstream 294676 15563750 ~ 15566563 (+) True LOC120554283
TU319214 lncRNA downstream 2449 15883763 ~ 15884010 (+) True G235152
XR_005638350.1 lncRNA downstream 244147 16125461 ~ 16126641 (+) True LOC120554276
TU319242 lncRNA downstream 244505 16125819 ~ 16126791 (+) False LOC120554276
TU319250 lncRNA downstream 314248 16195562 ~ 16195700 (+) True G235185
TU319285 lncRNA downstream 340106 16221420 ~ 16222735 (+) True G235216
XM_039793002.1 mRNA upstream 5100 15708530 ~ 15856139 (+) False LOC120554235
XM_039793001.1 mRNA upstream 5100 15841334 ~ 15856139 (+) False LOC120554235
XM_039793004.1 mRNA upstream 136195 15708530 ~ 15725044 (+) True LOC120554235
XM_039793005.1 mRNA upstream 136195 15708530 ~ 15725044 (+) False LOC120554235
XM_039793006.1 mRNA upstream 136195 15708724 ~ 15725044 (+) False LOC120554235
XM_039793028.1 mRNA downstream 104120 15985434 ~ 15992736 (+) True LOC120554249
XM_039793027.1 mRNA downstream 104120 15985434 ~ 15992736 (+) False LOC120554249
XM_039792544.1 mRNA downstream 118976 16000290 ~ 16033713 (+) True LOC120553995
XM_039792932.1 mRNA downstream 203095 16084409 ~ 16100512 (+) True LOC120554201
XM_039793029.1 mRNA downstream 220521 16101835 ~ 16121008 (+) True LOC120554250
TU318854 other upstream 951164 14806544 ~ 14910075 (+) False LOC120554715
TU318853 other upstream 1023148 14806544 ~ 14838091 (+) True LOC120554715
TU318609 other upstream 1716369 14115859 ~ 14144870 (+) True G234651
TU318348 other upstream 2835719 13002963 ~ 13025520 (+) False G234425
unassigned_transcript_1593 other downstream 48980 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 49509 15930823 ~ 15930904 (+) True trnas-uga_25
unassigned_transcript_1595 other downstream 52321 15933635 ~ 15933716 (+) True trnas-uga_26
unassigned_transcript_1596 other downstream 57071 15938385 ~ 15938466 (+) True trnas-uga_27
unassigned_transcript_1597 other downstream 59549 15940863 ~ 15940943 (+) True trnas-uga_28

Expression Profile