RNA id: XM_039792988.1


Basic Information

Item Value
RNA id XM_039792988.1
length 3801
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120554229
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17289184 ~ 17306938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgaaagccgGGAGGGGATGTAGCGGacgttgtgtatgtgtttccgAGTCTCATGCGACCGACGCTTTCCGACGCAACACGGTTAGCATAGCAATGCGTTTGACGGCGTTAGCTGACCGTAAATAAGGAGTAAGAAGTTTAATTTAGTCTCTTTTGACTATCCGAGGTAGATGCCCAGATTCTAGCATCTGAAGAAGCAGCGGAGGGAAGCAGAATGACGAAGCCCCGAAAAAAGCCGTGCCCCTCCTGTCGGGCCCCAAATTCCCTTGGGAGGATGACGTGTGTGGAGTGTGTCTGCCCCCTGCAATTTAATGAAGGATTAAAAAAGAAGCAAGCCAAGCTGAACCACTGTAGCTGGGCATCCACTGTCAAGTCTAACAGGAACTCCAGCAGGAGCGTTAGGTCGGCCCAGCTATCTGTTTTTAAACTCAGTGCCCTTGGCTGCTGCCCGATTCTTTTTCTCGGGCGTCAGGACCGCAAGGGGGAGATTTGCGGGGACATAGTCCACCACATCCCTCTGACTGATGGGGTGGTCCAGGAGATAGTGAAGGAGATGAGGAGACTCTATGAGCACCTCCTGAAAAGTTTACCTATGGATGTCCAGAAAGTGATCGTTGGTGAAGAACATCAGCAGGAGTGGGGCTCCAGTCTGGACCAGAAGGACACAAAGCCCCCAcgcattaaagaggaacaggaggaactccggaccagtcaggagggagagcagcttcaagggctggaggaggctgatatcaccaagttcccattcactctggtccctgtgaagagtgaagatgatgaagagaaacCTCCAttctcacagcttcatcaaagacCAACTGAAGAGAtgaaaacagaagctgatggagagggcTGCACAAAACCAGCTATTAACTCGGATCCAGATTTGCATTCAAAACCTGATGACGAGACCGGAGCcccttctgaacctgagactgatgatagtgctgattggaaggagaccagagaacctcagtcaggtttaaactctctgaatggTAACGAAGACTATGGCAGTGATCTGAGATTTAGTACTGGTGGGAGtgagtgtgggaaaagatttggcCCCAGTGGACACCTGAATTCTCATGCAGGAGAGAAACCATTCAGCTGCTCCGTCTGTAAGAGAGGTTTTGTAAAAAGTGGAAGTTTACATgtacacatgagaatccacacgggagagaaaccatttagctgctccgTCTGTAAGAAAGCGTTTACAGGAAGTGGAAGTTTACATgtacacatgagaatccacacgggagagaaaccatttagctgctccgtctgtaagaaatcttttagagagagaggaagtttacagagacacatgagaatccacacaggagagaaaccattcAGCTGTTCTGTCTGTAAACGAGCTTTTATAGAGAGCGGTAATCTTAataaacacatgagaatccactcaggtgagaaaccatttagctgcaCAGTCTGTAAGAAAACTTTTAGAGAGAGAAGAAGTTTACAGAAACACACGAGAgcccacacaggagagagaccaTTCAGCCATCTGGGGTGGAGCTCCAGTCTGGAAGGAGAGCAGATAACCTCAGTCAGGTTGAAACCCTCTGAAAATAATTGCATTATTTAAAAGTGATATGAGATGCAATACTCTGTGGGTCCTTTTTAAAAGTCCTACGATAATGAATAATTATCAAGAAATTGATCAGATTATGAACGTAATGTAAATCCACGGAATTCCAAAGAttaatttgttaatttttttttatttaaagtgtgcTTGTTTTCAAAATGGAACAAACAGCCAATTTATTTGACCCAATCCCTCTCCTAAATGGCAGCTGTTCTGTAGCCACAAGGAACAGCCACCCAACTCAGTCTCCCAGCAGACTCCCCGTCTTCATGACTAAATTTGAAGTGCTGTGACGTCACCAGCCCTCTAAAGGCAACAACTGCCGTCGTGCTTGGCTATTCCTGCACTCCAGATATTCTTCTCTAGCAGATGACACAAGTGCCTGCTTACAGTAAACCAGTTATCATCGCTGACTTGGGCAAAATCCACCAGCTAGCCCGAAACAGCTGAAGAACGAAAGCAGTTAGCACCAAGATAATTACTGGGACTGAAGCAAACCGCATCATTCAGCCTGCAGGATTGGTATGCAGCACAACAGAGACTGCATCGCTTGACTTCAGAACCACAGTTCTCCCAGCCTGGCTTTCCCACCGTGATGGCACTGATGGCTAACAAGGATTTCTTTCTGTGGTAATGTGACCAACTGGGCCAGCGTTAACATAGCGACCGCAGCTAAGCAAAGCCGTTAACTGTTTAGCTTCTTTTAATGTATATGTAGTGATTTGATTTAATGCTAACCAGacctatatttttgtaatgttCTTTTAGTGAAGTTATTGGATAGGCCAAACTGCTAAGTTGATGTTAGTTTAGGCTTTGATACAAAATCTAGCATGTAACTAACACCCTCTTTCTAAACCTGGtaccttaaaggtgcagtaggtaagccttataaaaccacctttctgtcatatttacataccctatgttccagtagaactacatgaagcaggtcatttcctctggcaccacctacaggctgtagtgcgatttgcaaaaatccaccgctccctgttaagacgcaccaatcagggccagggggcgTGTTCAACTGCATGTcagtcactgctcatgcacacgcattcattttcccttgtggggggaggggctaagaagttgtcgatgttcacatttgttggctaagtcctggatcttcgcaatcctacctacggcacctttaacgTACACAgattgattttaacattcatccagacacacacacacacactttgatagTAGGCAAACCTTTGATTTGACTCTGACGTAGGTCAATGCTGTGAGGAGACCCAAGTCTGCCTTTATTTGTTCTCTGTCCGGGCAAACCGATGTGGCCTTAACAAAGCGGAGTTAGCAACCCTTATAGCTGCACGGCTTCCCGGGAAGACCGCCTACTTGTTTCCTCGCAAATAGCTCTTTGATGCTCGgtcctcggggcagaaataagagcttttgAGACGGCCTGGCTCAGCTCCAGCTAaactgcagactgatctcacgAAGTGGCGTacgtatgacacgccaattcgtatgtcATTTGTGGCGcattatcaagacgcatactcgctttttagcgtgtttatcaacaccgtttggcctccattgacttacgtTACCTTGTGATTCCGTGTGAATTGacaccgtagcgagtagtatgaaaaggcacgtagggaggttggaccgagggggtcaaacacagatgggtcaaacacaggactttcacccaggagactggggatcgacccgtcgctttcttcttttcctaaacccaactggttcttcttttcctaaacccaacccacgTGTCAcgttttctaaacccaaccgtagctttcTCTTCTAGAAGTGATAACTTCAAATTGTTTCCGTTAACATTCCTCACATCTAATAGTGCTCACAGCAGAAGTTTGGGTATAAAGTCATATGTTGCGGGGGGGGCGGTCACAAATACATGCCGTAATAAGTCACCAGTAAACCCCTGCCATCACCGAATGTTCTGTATTCATCAGGAGCATCACCAAAGTCCGGCCCCAGCGCAACTCACTCTGCATTAACACTCATGTGAGCGACCTGCGGACACGGTTTGGatctaaatgtaaatggactgtttttatatagcgcttttctagtcttaacaactactcaaagcgctttaacatagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638358.1 lncRNA upstream 84516 17183355 ~ 17204668 (+) True LOC120554285
XR_005638359.1 lncRNA upstream 142692 17133116 ~ 17146492 (+) True LOC120554286
TU319447 lncRNA upstream 353518 16934799 ~ 16935666 (+) True G235332
TU319439 lncRNA upstream 356600 16880639 ~ 16932584 (+) False LOC120554243
TU319436 lncRNA upstream 448355 16840186 ~ 16840829 (+) True G235321
TU319642 lncRNA downstream 6071 17313009 ~ 17313865 (+) True G235497
TU319646 lncRNA downstream 38527 17345465 ~ 17345923 (+) True G235501
TU319675 lncRNA downstream 42927 17349865 ~ 17350086 (+) True G235530
TU319694 lncRNA downstream 73967 17380905 ~ 17381200 (+) True G235547
TU319695 lncRNA downstream 75917 17382855 ~ 17383085 (+) True G235548
XM_039792949.1 mRNA upstream 20887 17221309 ~ 17268297 (+) False LOC120554211
XM_039792948.1 mRNA upstream 20887 17234047 ~ 17268297 (+) True LOC120554211
XM_039792950.1 mRNA upstream 20887 17236994 ~ 17268297 (+) False LOC120554211
XM_039792951.1 mRNA upstream 26560 17234050 ~ 17262624 (+) False LOC120554211
XM_039792548.1 mRNA upstream 110371 17169385 ~ 17178813 (+) True LOC120553999
XM_039792945.1 mRNA downstream 33109 17340047 ~ 17343029 (+) True LOC120554209
XM_039793026.1 mRNA downstream 50509 17357447 ~ 17364065 (+) True LOC120554248
XM_039792931.1 mRNA downstream 468594 17775532 ~ 17807753 (+) True LOC120554200
XM_039793052.1 mRNA downstream 528956 17835894 ~ 17836902 (+) True LOC120554264
XM_039792923.1 mRNA downstream 575527 17882465 ~ 17935473 (+) True als2b
unassigned_transcript_1702 other upstream 183971 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 184543 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 215101 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 215459 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 216064 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 646201 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 860348 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 869887 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2689861 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2901391 20208329 ~ 20233795 (+) False prkx

Expression Profile