RNA id: XM_039793000.1


Basic Information

Item Value
RNA id XM_039793000.1
length 1433
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC120554234
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16388697 ~ 16612671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagaagaaggttcATATGTTACCGACCTAAACACCGGAGCAGTTAGCGGAGAGGAGACGTTAGCCGGGTCCGAACAACGGCAGAAACCTCCCTCGAGGAGTATTAGTCTGCTGCTCAGACATGGACCGACACCGGAAACAGCTGGAGGAGGTTTTAAAACCGGAGACGAAGCCGCGAGGAgaagcttTACTTTCAGAAGTCCACAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACAAAGCCCCcccacattaaagaggaacaggaggaactccCGATGAGTCAGGaaggagagcagcttcaagggctggaggaggctgatatcaccaagatcccattcactcctgtccctgtgaagagtgaagatgacaAGAAGAATCCTCAGTtttcacagcttcatcaaataCAAACTGAAGAGCTCAAAAccgaagctgatggagaggactgtggaggaccagaaccagccatgAACTCAGATCCAGATACACATTTACAACCAGATACTGATGAcaagactggagactcttctgaacctgagactgatgacattGCTGATTGGaaagagaccagagaacctccgtcaggtttaaactctctgaatcgAGGGGTAGGGCCAATCGGGACTGGTAGATATCCCTTAAAACCAAGGACTTTCGCGAGCTTACTTGAAACCGAGGGGTACCCAGAATACACTGCGCAACCGGCAACAATGGCGGCCAGATCGACCAGAGAGTcccataaatgacactGATGAAAGAGATGGGGTTGGAGGGAAGGGCTACCGGCCAGCAGGCATCAAAGAAGTGGGAAAATCTTAAGCGAAAGTACAAGGAACTAAGAACTCTCAAAACGGGGTCAGGTACAGACAGGGGGGAAGGGACCGCTGCAACCTGGCAATTTTATGAAGATATGCATAAGGTGTTGGGTGCAGGGCCCTCGCTCGACCCTCATGTGGTGGTGGCATCCTTTAATGAGGATCCCACGCCAATCCTCATGGAGACTGTTGAGCCCTCATCCCCAGCCAGCACCTCTGCAGCCATCAGTTCACCGCTGCCAACTACCtcagccccccccaaaaaaagaaaaaaaaatcccattctGGATTTCCTCATCGAGGAGTCCAAGAAAGAGCAGAGGCGCCACGAGGAGCACGAGGCCAAGACGGAGAGGTTCTTGTGCCTCTTTGAAAAGATGATAGATAAgctgtagtttttttgtttgtggttgtctttttttatagtttacacatttgagtgccttttttatatatatatatatatatatatatacttaacAGTATACAGAATGACGtccattctgtttttattctcatatgttaagtgagtgttgtacttttgagagcaaagattaaccggagtcaaattccttgtttgtttgcgccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319333 lncRNA upstream 64449 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 64480 16322841 ~ 16324217 (+) False G235243
TU319285 lncRNA upstream 165962 16221420 ~ 16222735 (+) True G235216
TU319250 lncRNA upstream 192997 16195562 ~ 16195700 (+) True G235185
TU319242 lncRNA upstream 261906 16125819 ~ 16126791 (+) False LOC120554276
XR_005638354.1 lncRNA downstream 169415 16563427 ~ 16566044 (+) True LOC120554281
TU319398 lncRNA downstream 200186 16594198 ~ 16594849 (+) True G235284
TU319436 lncRNA downstream 446174 16840186 ~ 16840829 (+) True G235321
TU319439 lncRNA downstream 486627 16880639 ~ 16932584 (+) False LOC120554243
TU319447 lncRNA downstream 540787 16934799 ~ 16935666 (+) True G235332
XM_039793039.1 mRNA upstream 168011 16201422 ~ 16220686 (+) True LOC120554255
XM_039792546.1 mRNA upstream 193845 16183840 ~ 16194852 (+) True LOC120553997
XM_039792964.1 mRNA upstream 212669 16171047 ~ 16176028 (+) True LOC120554217
XM_039792989.1 mRNA upstream 235824 16140119 ~ 16152873 (+) True LOC120554230
XM_039793029.1 mRNA upstream 267689 16101835 ~ 16121008 (+) True LOC120554250
XM_039792974.1 mRNA downstream 100120 16494132 ~ 16501285 (+) True LOC120554222
XM_039792996.1 mRNA downstream 167039 16561051 ~ 16612671 (+) False LOC120554234
XM_039792997.1 mRNA downstream 167039 16561051 ~ 16612671 (+) False LOC120554234
XM_039792992.1 mRNA downstream 204832 16598844 ~ 16612671 (+) False LOC120554234
XM_039793010.1 mRNA downstream 249630 16643642 ~ 16658812 (+) False LOC120554238
unassigned_transcript_1641 other upstream 163870 16224755 ~ 16224827 (+) True trnat-ugu_42
unassigned_transcript_1640 other upstream 222076 16166549 ~ 16166621 (+) True trnat-cgu_14
unassigned_transcript_1639 other upstream 225742 16162882 ~ 16162955 (+) True trnat-agu_39
unassigned_transcript_1638 other upstream 321381 16067244 ~ 16067316 (+) True trnak-cuu_33
unassigned_transcript_1637 other upstream 322071 16066553 ~ 16066626 (+) True trnat-agu_38
unassigned_transcript_1646 other downstream 108060 16502072 ~ 16502153 (+) True trnas-uga_33
unassigned_transcript_1648 other downstream 112609 16506621 ~ 16506694 (+) True trnat-agu_42
unassigned_transcript_1649 other downstream 113557 16507569 ~ 16507641 (+) True trnak-cuu_34
unassigned_transcript_1650 other downstream 113881 16507893 ~ 16507966 (+) True trnat-agu_43
unassigned_transcript_1651 other downstream 114829 16508841 ~ 16508913 (+) True trnak-cuu_35

Expression Profile