RNA id: XM_039793011.1


Basic Information

Item Value
RNA id XM_039793011.1
length 3207
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC120554239
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15636430 ~ 15654565 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTAATAACGTTTCTTTTACACGATAATCAAAGCCAATACAAGCCCGAGCTCCGCATGCGCTAGCACGCTGGGTTATCTCCGATGTTTACCAGATAGTTAGCTTCGGCTAGCCGCTGTGTGTGGCTAACTGccagtgttagcattagctttcTTTTGGCGTTTTGTGATTTAACTTTCAGTTACTagtgttttaaataaacactAGTTTTAAGGAGTTTTAAATTCTAATGTAGCTGAGCAGAAGCTATCAGGCTAATACGCAGTTAATATTAATGTGTCGCTGCAGTTAGCTGTTGTCAAATATAACAATGTTATATTTTGtataggggccagtaaaaattgaCTTTGGGCAAGTATAATTGTATTGTCAATCCCTAGAGCCTATTATCTCCTTCCCTTTGGTAAAGGATGGTCCAGTATAGCCTGTGCTAAAGGAGATTAAAGAAAGCACCTGATTAAGTGCAGGATGCTTTTGTCCATGATATTAGTAAACAAGTGTTTATCAAGATTAACTTTATTGTTGCACACAAATTTGTCATGGGCACTTAACCCATGCagcagtcataaaaaaaaactgttaatgtACATGTAATATGATGACAAACAATAACATTGTGTCACGCATtgcatatatttaaataatatatatatatatatagctaataATTGTgcaccgtttaaaaaaataaatgcttgTCACCCCTGCAGTCTAACCGTCCAACCGTTACACTGAACGGtacacagatttttttaaagatacaaaaaaactttgttctttcacaaacgtgctcattcatgtgtaattacttccaccaactaatcaaagtattcttgtaagcgtagaatctgtcATTCAGAATACGTACAAGTGAGTCACTCGAATGGCTGcagccatgttgcgcctccatctttaaaatacattagccaaagagggacatacctggACATTCAAGCACCGCCATTcacgcttttacactcagtggcagcgtgacgaatgccagggggggAGCTTACTCgcgactgccggcagatttgaaagccctgttgaagatggaggatcacaCCTATTCTCGAGGACGTGTAACAAAGTCGCCAAGGAAGCggaaaagagaattaaaacgacaacgcgacaggcaaagcaacacgACCAAAGTGAATATTGGgttggcttttccaagatggaaagagctcatgAGGAGCAAGAGTTTTAAAAGGGACGccgaagttgcctgctttcttatCGACAGAATCCAGAGTCCAGCAGCCACAGTGGAGACCTGCTGTATTTCAGACCAGGATCAGAACAAGAGCAGAATGGAGCACAACAACCAGAACCCGGAGCAGCAAAATAACAACGTCTCCAGAAGACAAGCAGCAGGCTCGGCCTCGGATACCACCGACGTGCAGAAACAAAGAGGAAGAGGGGGACTCGGATGTCATAGCTGTGAGCACTGTGACAAGTCCTTCAAAACAGCTACAAATTTAAAGATTCATCggagagttcacactggagaaaaACCGTACATCTGTGACAAATGTGGGAAAACGTTTTCTCGGAGTGGTAACTTAAAAAACCACTACCgaattcacactggagagaaaccaTACAGCTGTGGCGAATGTGGGAGAACTTTTTCTTCTAGTACTACCCTAAACaaccatcaacgcattcacactggagagaaaccaTACAGCTGTGACCTGTGCAAGAGAAGGTTTTCTCGGAGCGGTCACCTTAAAGGCCACCAACGTATTCACACTGGACAGAAACGTACTGGAGAGAAACATACTGATGTGAAGTACTGGTGTGACCAGTGTGGGGCAGCGTTCACAAGTTTAGGTGGCTTCAAAATTCATCaccgcattcacactggagagaaaccGTACAGTTGTGACCAATGCGGCGCAGTTTTTAGACTGTCAGGTAGCTTCAAAATGCATCAacgaacacacacaggagagaaaccttacAGCTGTGACCAATGCAGTGCAGTTTTCGCGCACTTGGGCAACTTGAAAAGCCATCAACGCAGTCACACAGGGGAGAAACCGTACAGATGTATCCAATGTGGTGCAGCTTTTGCACGGTCAGACAGCTTCAAAAcccatcaacgcattcacactggagataaacctTACAGGTGTGACCAATGTGATGCAGATTTCATACAGTTAAATCACTTGAAAGTCCATCAACGCATTCATACTGGAGAGAAACCCTACAGCTGTAACCTATGTGGCAAAAGTTTCACCAATCAAAGTAACCTAAAATCCCACCACCGTGTTCACTCTGCAAAGAAATGAGCTGCCAATTGCCGACGATCAAAATGGTTTCTAATTGGTTGATATGtggaatacattttatttggatACTTTTTTAGTTTTGGAAAAGCTTttacaatttacaaaaaaaatgtcttcctCAAATATGAGTTTGTTTGTTATGTGAATTCTTACTGCTAATATTACTTAGTGGTGTAACGGATCATAGATCCATGGTCTGTACGGATCTACACTCACGGTCGGAATGCAAATTCAATCAATTGCAAAGTTTAATAGTGGGAAAGAAATTTTTACGGTCGCTGTTAGCAATCGGTCCCTCCGTAACTCATGTTTTAGTTAATGTAATAAAGATCTTAATATTGCACCTAATCTGCCTTGCTCAGTAACTTCGGGAACATTGACAACTACGATTTTCATTTTGCAAAACAATAAATTATGTATTAATTAaccatttattcattaatttatctTTTATTCCCAAAGAACCTTGGAGTAAATTTTGCTAGCCACTTATCCAGTAATGTCACCCAAGCTTGTTTTGTTGTTCAATTAAGAAACCTCTCCGAGATCAGACACAAAAAAATCCTACATGTTTTTCTGTCATCACGCATTACCTATTTAAACTTATTCAGTCTACCAATTGCAATTCATCCAGAACTCAGCAGTCAAATTATTAACTAAATCTAAGAGGTTCTGTCTGGTCACTCCAATTAACAATTGTATTAATTAACATTCTTTAACTGCAAACTGACATTATCTAACTGTAACTTAACATTCTAGTACTGCAACATAAGTGTTTCTCAATACCAAGTATGCCAAGTTCAAACTTGTGAGCTTTGTAGTTCAGACTTTAGAAAAAGTACATCTGTGAGCTATTTCTTTACTGTAACGTATATTTACAATAAAACGAAATATGATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319096 lncRNA downstream 79014 15556638 ~ 15557416 (-) True G235053
XR_005638347.1 lncRNA downstream 150943 15482306 ~ 15485487 (-) False LOC120554274
XR_005638348.1 lncRNA downstream 150943 15482306 ~ 15485487 (-) False LOC120554274
XR_005638346.1 lncRNA downstream 150943 15482306 ~ 15485487 (-) True LOC120554274
XR_005638351.1 lncRNA downstream 207054 15428280 ~ 15429376 (-) True LOC120554277
TU319122 lncRNA upstream 5728 15660293 ~ 15665882 (-) True G235075
TU319213 lncRNA upstream 228060 15882625 ~ 15883001 (-) True G235151
XR_005638352.1 lncRNA upstream 319010 15973575 ~ 15991395 (-) True LOC120554279
TU319276 lncRNA upstream 477021 16131586 ~ 16132246 (-) True G235208
TU319284 lncRNA upstream 545767 16200332 ~ 16200591 (-) True G235215
XM_039793032.1 mRNA downstream 2810 15623152 ~ 15633620 (-) False LOC120554251
XM_039793031.1 mRNA downstream 2810 15623152 ~ 15633620 (-) False LOC120554251
XM_039793030.1 mRNA downstream 8845 15623152 ~ 15627585 (-) True LOC120554251
XM_039793041.1 mRNA downstream 24770 15602315 ~ 15611660 (-) True LOC120554257
XM_039792540.1 mRNA downstream 537790 15092204 ~ 15098640 (-) True LOC120553991
XM_039792966.1 mRNA upstream 17572 15672137 ~ 15677967 (-) True LOC120554219
XM_039792969.1 mRNA upstream 30002 15684567 ~ 15699703 (-) True cep70
XM_039792970.1 mRNA upstream 30002 15684567 ~ 15699670 (-) False cep70
XM_039792968.1 mRNA upstream 30002 15684567 ~ 15699560 (-) False cep70
XM_039792961.1 mRNA upstream 83877 15738442 ~ 15754859 (-) True LOC120554215
XR_005638386.1 other downstream 622616 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1569 other downstream 673997 14962361 ~ 14962433 (-) True trnar-ccg_4
TU318891 other downstream 786693 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1568 other downstream 2524202 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 2579743 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1570 other upstream 131756 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 133762 15788327 ~ 15788399 (-) True trnak-cuu_17
unassigned_transcript_1572 other upstream 135083 15789648 ~ 15789719 (-) True trnav-cac_14
unassigned_transcript_1573 other upstream 135651 15790216 ~ 15790288 (-) True trnak-cuu_18
unassigned_transcript_1574 other upstream 136752 15791317 ~ 15791388 (-) True trnaq-uug_7

Expression Profile