RNA id: XM_039793015.1


Basic Information

Item Value
RNA id XM_039793015.1
length 2232
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC120554242
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16681028 ~ 16683511 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtaaaatcggttttgcattctatcacccctttaaatattgaaatatctTTGAAGGTAATATTTCtgtgtgagtgttttttttgtttagttgttTGATAGTATTTGGGAGAGAGTTCCATTCACACATTGCTCTGTACCTAACTGAACGCTGAAGTGATTTGGTTTTCACTTTAGGTACAATAAAATGACCTACTGCATGCCTCATTGGATAATGATGTGTATCAGTACTTAAAGATAGTTTTGTATATAAAGTAAAAGGTCTTTTGTTTGTTGTaacattatgtaaaaaaaaattagtgaATACACAAATCTATTTTTAGCTTTAAACCATCAGAGGCTTTCATGCATTTTATCAACATTTGATCTAAACCCACATGAGTGGTTCATGTGATTTCATACATTAGCAGTGAGATAATTAATGCATAATAATCATGAAATAGTGATTATTTTTCAGACCATAATCATACCAACAAAGTGTGTAATTGTTGCATCCCTAGAAACAACAGAACTGGACAATCCTCATGCTTCTTTTGAGCTACCAGTGTGACGGCATTTTGCCTTCCCCTGTGagttatgtaaacaaacaattgtTGAAGCTTGTTGGCTCTGACTGGACTTCATGGTGCATTCTGCTGGCCCTCTGTAAACTCATATTGCATTCATGTCCCCCTTGTTATTGTGTCAGTGCtggaaagaaaatgtaaatcGAAGATTGAATTGAAAATACTGACACCCCTATTTATTATGAGAGTGAATAGAGCTATGTATCAAATTATTGTTAACATTCACATTAAtagctgttagtttgtgtttCACCTTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTATGGACCAGGAGGACACAAAGCCCCCCCACattaaagaagaacaggaggaGTTCCGGATCAGTCAGGATgaagagcagcttcaagggctggaggaggctgatatcaccaagttcacattcactcctgtccctgtgaagagtgaagatgatgaagagaaacCTCAGTattcacagcttcatcaaagacaaactgaagtgataaaaacagaagctgatggagaggactgtggaggaccagaaccagccatgAAATCAGATCCAGATACACATTTACAACCAGACACTGATGAcgagactggagactcttctgaacctgagactgatgacagtgctgattggaaagagaccagagaacctcagtcaggttCAAACTCTCTGAATAATGATAGATTCCCTGTTAGTGATTCAAGATGTACTGCTGGtgagaaaccatttagctgctctgagtgtgggaaaagatttggcACCAGTATAAATCTAAAGAGACACATGAAAACTCATAaaggagagaaaccatttagctgctcagtctgtaagaaagtTTTTACCATGAGGGAAAGTTTAAAGAGACACATGAGATATcatacaggagagaaaccatttagctgctcagtctgtaagaaagcttttatAGTGAGCGGATATTTACATAGACACATGAGAAtccacacaggagagaaaccatttagctgctcagtctgtgaGAAAGCTTTTACAGTGAGTGGAAGTTTAAAGAGACACATGACAATCCACAAAGGAGAGAAATcatttagctgctctgagtgtgggaaaagatttgCCACCAATGCAcatctgaagagacacatgagatatcatacaggagagaaaccgtttagctgctcagtctgtaagaaagcttttacagAGAGTGGaaatttacagaaacacatgagaacCCAACACGTGAGTGTTACAAGCTCCCCCCTTGTTTAGCTTCTCCCTGTTTGATCTACTCAGGTGATCCAGATTTGATTGTTAGTGGTTGGCTCCGCGCCCTGTAATTAAGGCTGGAGGACTCTATCAGTATGAAGCAGATGTGCACCAGTGTGTTTATTAATTGGGGAATTGAGGTCTGAGGGGTATGGCACAAAACCAAGATGATATTTGGAAGTAAATTCATGATATTTGGATATTGTACTATAAAAACAGATGTATAAATGGTAATTAGgactgcagctatcgattattttattAATCAAGTATTCTACAGATTATTCCATCAATTAATTGAGTAGCCTAATCGGATAagatacttttgttttattgaagagcaataatgGACAATAGTTTAATTTACttttcggaaaaagcaacatttgtattgcgtACA

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319398 lncRNA upstream 86179 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 114984 16563427 ~ 16566044 (+) True LOC120554281
TU319333 lncRNA upstream 356780 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 356811 16322841 ~ 16324217 (+) False G235243
TU319285 lncRNA upstream 458293 16221420 ~ 16222735 (+) True G235216
TU319436 lncRNA downstream 156675 16840186 ~ 16840829 (+) True G235321
TU319439 lncRNA downstream 197128 16880639 ~ 16932584 (+) False LOC120554243
TU319447 lncRNA downstream 251288 16934799 ~ 16935666 (+) True G235332
XR_005638359.1 lncRNA downstream 449605 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 499844 17183355 ~ 17204668 (+) True LOC120554285
XM_039793034.1 mRNA upstream 6338 16659803 ~ 16674690 (+) True LOC120554253
XM_039793033.1 mRNA upstream 6338 16659803 ~ 16674690 (+) False LOC120554253
XM_039793035.1 mRNA upstream 6338 16659803 ~ 16674690 (+) False LOC120554253
XM_039793036.1 mRNA upstream 6338 16659803 ~ 16674690 (+) False LOC120554253
XM_039793010.1 mRNA upstream 22216 16643642 ~ 16658812 (+) False LOC120554238
XM_039793014.1 mRNA downstream 51150 16734661 ~ 16751516 (+) True LOC120554241
XM_039793013.1 mRNA downstream 55521 16739032 ~ 16751516 (+) False LOC120554241
XM_039793185.1 mRNA downstream 96493 16780004 ~ 16782236 (+) True LOC120554340
XM_039793018.1 mRNA downstream 234451 16917962 ~ 16932606 (+) False LOC120554243
XM_039793019.1 mRNA downstream 234451 16917962 ~ 16932606 (+) False LOC120554243
unassigned_transcript_1670 other upstream 57952 16623003 ~ 16623076 (+) True trnat-agu_53
unassigned_transcript_1669 other upstream 58273 16622683 ~ 16622755 (+) True trnak-cuu_44
unassigned_transcript_1668 other upstream 157716 16523239 ~ 16523312 (+) True trnat-agu_52
unassigned_transcript_1667 other upstream 158030 16522926 ~ 16522998 (+) True trnak-cuu_43
unassigned_transcript_1666 other upstream 160633 16520322 ~ 16520395 (+) True trnat-agu_51
unassigned_transcript_1671 other downstream 13536 16697047 ~ 16697120 (+) True trnat-agu_54
unassigned_transcript_1672 other downstream 14358 16697869 ~ 16697941 (+) True trnat-cgu_17
unassigned_transcript_1674 other downstream 46107 16729618 ~ 16729690 (+) True trnat-cgu_18
unassigned_transcript_1676 other downstream 73054 16756565 ~ 16756637 (+) True trnat-cgu_20
unassigned_transcript_1677 other downstream 76847 16760358 ~ 16760430 (+) True trnat-ugu_43

Expression Profile